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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2973670 |
| Transcript ID | Lj4g3v2973670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA repair helicase XPB1-like [Cicer arietinum] gi|502139224|ref|XP_004503689.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 3 | 94 | 92 | 4.10E-23 | ||
| TIGRFAM | 3 | 644 | 642 | 0 | ||
| PANTHER | 4 | 681 | 678 | 0 | – | |
| PANTHER | 4 | 681 | 678 | 0 | – | |
| PRINTS | 55 | 74 | 20 | 1.40E-136 | – | |
| SUPERFAMILY | 148 | 361 | 214 | 9.46E-34 | ||
| PRINTS | 167 | 193 | 27 | 1.40E-136 | – | |
| Gene3D | 180 | 359 | 180 | 7.20E-29 | ||
| SMART | 182 | 363 | 182 | 7.80E-20 | ||
| Pfam | 185 | 341 | 157 | 5.30E-14 | ||
| ProSiteProfiles | 197 | 359 | 163 | 17.696 | ||
| PRINTS | 198 | 220 | 23 | 1.40E-136 | – | |
| CDD | 204 | 341 | 138 | 9.03E-09 | – | |
| SUPERFAMILY | 295 | 369 | 75 | 1.52E-29 | ||
| PRINTS | 305 | 325 | 21 | 1.40E-136 | – | |
| Pfam | 367 | 615 | 249 | 1.30E-113 | ||
| PRINTS | 371 | 393 | 23 | 1.40E-136 | – | |
| Gene3D | 400 | 521 | 122 | 3.60E-10 | ||
| CDD | 402 | 522 | 121 | 1.16E-10 | – | |
| SUPERFAMILY | 403 | 617 | 215 | 1.52E-29 | ||
| PRINTS | 409 | 424 | 16 | 1.40E-136 | – | |
| ProSiteProfiles | 414 | 580 | 167 | 12.043 | ||
| PRINTS | 429 | 451 | 23 | 1.40E-136 | – | |
| SMART | 442 | 520 | 79 | 5.20E-09 | ||
| PRINTS | 476 | 494 | 19 | 1.40E-136 | – | |
| PRINTS | 495 | 520 | 26 | 1.40E-136 | – | |
| PRINTS | 532 | 555 | 24 | 1.40E-136 | – | |
| PRINTS | 623 | 642 | 20 | 1.40E-136 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of Lj4g3v2973670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2973670.1, powered by CORGI.
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