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LotjaGi4g1v0428600.1

Overview

Field Value
Gene ID LotjaGi4g1v0428600
Transcript ID LotjaGi4g1v0428600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80293960..80302166) extracted from Lotus japonicus Gifu genome v1.2.

TGGTTGACGGTGCCGTCGGTGCATGGAAATTAAACTCTTTTAAAATTACGTAATTTTTTTTTTGGTCAATTAAATTTTTG TTTTTATTTGGAGAAAATTTAGAAAGAAAAAGCAGGGATGAAGATTTGGGCCGACCGGTCCATATAATTGCGCCACCGTC TTCTTCCTCTGAATTCGCTCGCGCTTTCTTTTTCTCAGTTCACTCGATTCTCTCTCGTTTGCAACTCTGCTTCACAAATC TCACACGTTAATCAATCATCGAATTCATGGGACACGGTGAAAAGGGACGACCCTTCAAAAAGCACAAAGGCTCATCCAAA TTCGTCAGTTTCTCTCTGATTCCTTTTTCTTCTGTTGATTTTCGTGTTTCTCACAGTTTTTTCCGCAGGAAGATCCCCGG AAAGGATTCGCCGAAGATGACGATGTATATGGCGGCGATGATGCCCACGATGATGACGGTAATCTTCATATTGCAATCGA TTTCTATGGAAGCCATTAGACTAGGATTGTTATTGATTGATGATATTGAATTGAGGGTTTTCGCGTGAAACAGAAGGAAA AACCAAAGATTTTAGCAAATTAGAGTTGAAACCAGATCACCAGAATCGCCCTCTCTGGGCTTGTGGCAATGGCCGCATAT TCCTTGAGACCTTCTCTCCTTTGTACAAACAAGCTTATGATTTTCTCATCGCCATCGCCGAGCCCGTTTGCAGGTAGAAT ATATTAATTATCAGAAGGGTAAATCTTGTGCAATGGCATGTTGAATTATTAGATTGGTGTTTGATGTCAATGATGTGTGT GTGTGAATTGTGGTGATGATGATGATGATGGATAGGCCGGAGTCAATGCATGAGTACAATCTTACTCCGCACTCGCTGTA TGCTGCCGTTTCGGTTGGTCTAGAAACAGAAACAATCATAGCTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCTAAAG ATATGATTAAATTTATACATGATTCCACTGCAAATTATGGCAAAGTGAAGCTTGTTCTTAAGAAGAATCGCTACCTTGTT GAATCTCCATTTCCAGAAGTATGTAAACAATGGGTTCCCCTATGTTTTCCTTACTAATCAGTGCTGATTCTATGTTAAGA TCTGATGCGGTTCGTCCTGACAAATTCTGCAGGTGTTGAAGACACTGCTCAGGGATGGAGTTATATCTCGAGCAAGGATT ACTTCTGAGGTTTGTGTTCACATTCTTAGCTCGTGGGGCTCTTATTAACGTGTTTCTCAGATATTCTTGAGTCTTGACTA TCTTGTTGCGCTGCATGTAACTGCATCTCTAGTATTTCCCTATGAGTGGGTATTTGTGGCGCATGATTGGATTGTCTGGT TTCTATTTTGATATGTCACTGCACATATCAGAGGTTCTTCTAAATATTAGCATGTTGTATACAATTGGCTGCTCATAGAT ATTTTCTCCTTTTTGTAGATTATTGATCCCTGAAAATATGTAGTTCTGGCTGTACATTGCTTTTGCTATTTACTGTGGCT ACTGTATTATGCCTTGCAGTTTGCTTATCACTACCCCTTACAATATACTATGAAATTCAGAATTCATATTCCTAATTGTT TATAGGGTGCAAATGGAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACCCATGATGAGTTGATAAAT GAAGCAGAAGTGGCAGCAGTTGCAGAAGAGAAAGAAGCTCATTCGTTTGAAATTGATCCTGCTCAGGTATTGTAGGTGTG AGGTTTTGGCAAAAATTGCAGTATATTATACTCCAATGCTCTTAATCTCTTTGTTTTTTGTCTGGAGTCATATTACCAGG TCATGTTGTTGTTATTGTTGAAAATTTTATGAGGGTTTCTGAGAATAGATTAGATGGTTAGCAGTAATCAGAGTAGAGCA ATTGAAATTGCCTTACATCAAACTTTTCTATTAAAATATTTGTATGATTTGTATACAGGTTGAAAATGTAAAACAGCGTT GCCTGCCAAATGCATTAAATTTTCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAGTAAAGCTTTATCTACT TGTTCTTCTTAATGTCTATGAGGATTATATTCAATATGTTTACTGATGTAAACATCTTTTAAATTTATGGTGATGGAGTT TAAAGTGTTCTTTAGTGACTCATGGTATTACTCTTTTAATGCCGCAGGTGAACCCAGACCTTGACATGGAACTAAAGCCT CAGGCACAACCTCGACCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAAGGCTGACAGTTTTTGCAAGGG CATGGGTCACTGGCATTTCAATCTTAATTTGCTTAACTCGAACACCCATCTACTTTCATTTTAAACTGATTTATTTTACT TCTTGTATTGTTTAGCTTGAGATCTAATTATCTAAAGCACACTGTTTTATACATATTTGAAGACTATATTTTCGGCCTCG CTGATAAACCTTGGAATACTATGAAGGAAAATTGGAGTTTTAGTAAAAGAAAATATACAGAACTGGAGCATGTTTTAGAA ATATGCAAGTGTTGGATCAATAGTCTCTAATTGTTTTTATAACTCCAGAAATTGGTGTTTGTACCTAGTAGCAAAAGTTA TATTTAAAAATTCATGATGTTGATATTTGGATTAGCATAGCTTATCTCTAACATAGTTAAGGGTCTACTGACTTAAGCAA CGTAAATGTCCGCACTGTGTAATTGTATGCTGAAACATACATTACTTTTACATTTTTATTGTCCATTTCCTTAGGTAGAG CAAGATCTGGTATCATAGTTCTACCCTGTGGTGCTGGAAAGTCCCTTGTTGGTGTTTCTGCTGCTTGCCGGATAAAAAAG AGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTCCAGTTTAAACTATGGTCAACTATTCGAGA AGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACCTATAATA TGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATTATTGAGGAAATAAGAAACAGAGAATGGGGATTGCTT CTCATGGACGAGGTAATCATAAAAATTCAGGTTTTATCCTCTTCGCCTGAAATCTTAAGGTTGTTCCTTATGCATCATAT CTTGGCATGATATGCAGGTGCATGTGGTTCCAGCCCATATGTTTCGGAAAGTTATTAGCATCACTAAGTCTCATTGCAAA CTTGGGCTCACAGGTATGCCATTATACGTTGGTTTAATGTCACCCTGCTTTTGAATTAGCCTTTTTGACGGGACTAAGGT AACTGTTAAATTTGCAGCTACACTTGTGAGAGAGGATGAACGGATTACAGATCTGAATTTCCTAATTGGTCCCAAGCTGT ACGAGGCAAATTGGTTAGATCTTGTAAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGCCCAATGACA AAGGAGTTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGGCAGGTGAGGCCTCTTGGAACACTGTAGATCTT TATAGTTGAAATTATAAGGAGTGGTTGTGAAATCTGGGTTTTTCCGAACATTTGATCATTGTTTTCAACACTAAATTACT TTTCTTTTTGGTTATTAATGAATTGAAAAATGTTTTTATGAAAAATTTTATGGGCTCAATTTTTTGTAGTTTACCAGCTT GAGTTCACTCATCTTAGTTGATGATCTTTACATGTGCAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGCATGTGA ATTCCTCATTAACTATCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGT ATGCTATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGGTATTGCTGACATATATTGACCTTATTTTGAAGATGG GAGTTCAAAAAAAAAAACAAAAAAATAAGAGGAAGGTGGGATTTTGGTTCTCCTGTTTTACCCATTAGATTCTGATAAGC TTTATGTGCAGCCATGTTGAGAGGACAAAAATTCTACATGCATTCAAAACTAGCAAGGAAGTAAATACTGTTTTTCTTTC CAAGGTATCTGTTCCTCTTCATTAATTGTTAGCTAATGTTTGTCATATGTAGTATGTTCAATGGAAGTCCTCCTCGGTGC TTCCTGTTCATACTAATTGATATTGTGGGCTACTCCCTGTTAGTAACTTAATAAAGAATGTGATAGTTGATAATCTAATC CAAAACATTGTTTCTTCTATTCTCAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGTGATAATTCAGATCTCT TCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTTTGGGTCGTATTCTTAGGGCAAAGGTCAGTTTCCTGAACTTATG TGTGTTATAAATTCTGAGTATTAGGTTTTGGTTACTCTTATGAATTTTATAATTTCATTACTTCTTAGGAAGTACTACTT ATCATTGTTGTCTATCATACTCACCTTACCGATTGAATTATAAACTTAAAATGATGGTTATTGTAATTGGGAAGTTCTCT GCTGTTGTATATTTATGTTGTCTGTAAATAATGCATTATGAGGGTTGACTGACTTTTTCAATTTATTGAATTAAACGGCA GGGAAAGATTGAGGATAGGATGGCAGGGGGTAAGGAGGAGTATAATGCATTCTTTTATTCCCTCGTGTCAACTGATACCC AGGTATACATTTATTTTCTGCCAAGTTGTATACTGTTGAATTAACTGATCACGCTATCATTGGAAAATAAAAATTGAACC ATCATGCAAGGTATTTATGGTGTAATGTACATTGTGCTGCTTTTGTTTACAGGAGATGTATTACTCAACTAAGAGGCAGC AATTTCTAATTGATCAGGGTTACAGTTTTAAGGTATTTTCTTCAAATTTTAGGTTCACTCAATATTGCACTTCTGGTTAT ATCCTCCAGGGACACATGAATTTGTACATTTGCTTTACTGTATTCATGGTTGTCGACATGTTTCATGGGATAGAAGTGAC TTGTCTTTTGTCTCATTTAGGATAAAGGGTTGAGAAGAACTACAAGTTCTTTTGATAGTTGTCTATTTTTTTGTTGCTAA ACATCAACTAGTTGCTGCTTTGATGTGATGGCCGTGGCTTCTTAAAAAGAATCCTTGAAATATATCATAAAGCAAGCAGT TAGGACTTCTGGATGATTCTAAGCATTTTTGTAATACATGTAATATTTTCTATTGTTGCATGCTTGTTCGAAATTCAAAC AAAGTGCACTGGAAAGATGATAAGTTATGCTTGGTATGAAGGAAATGCAATTAAAAGAATTAAACTAGTTAATATTTTTT TGACTCAACCCAGTTTAGACACCTGGTCAATTTCCTTCTCTTTCCGAAACTTTCTTACCGTCACTGAACACTGCATGTAC AAACCTGAATCTTTTAAGCTCAGTGGTTTAGAAAACTTGATTTAACAGTAGTTCCAATGCGAAGCTTATAATTTGTAATG TATGTTGGCCACCAAAATTGTCTTGTCAAGATCTCAATCTATACATGCTTAGTTTTCATGATACATGACAGGTAATTACA AGCTTGCCTCCATCCGATGAAGGATCTCGTTTGAGCTATCATCATCTTGAGGATCAGTTGGCTCTTCTTGGAAAGGTTCC CATCCTCTCTCCCTTTTGACTTAGAATTGAATTGTTGATAGGGAAATAACTGACGTGTATCTATCAGGTATTGAGTGCTG GTGATGATGCGGTTGGGTTAGAACAACTAGAAGAAGACACAGATGAAATAGCTCTTAACAGTGCCCGTCGTTCTCATGGA TCCATGAGTGCCATGTCAGGTGCAAAGGGGATGGTTTATATGGAGTACAGGTTTGTTATCCTCTTGATTTGCCTGATACA ATTAAAATGAGCGACGTTCTAATTTATCTCAAGCTGTTCGGTTTCCTTGAGTTTTTATTTCTTTAGAATCGTATTATGTT AACCGGATACAAACTATAGATCTTTGATCGTGATTGCTTTCTTCACTGTGTACAGTACTGGGCGTAAAGGCCAAGGACAG ATTAAGAGCAAGCCGAAAGATCCAGCAAAGAGACACTTCTTATTTAAAAGACGATTTGGCGCAAGCTAAAAGTGACCAGT GCAGTGATGTTCGATGTGATGTTTTGTATGACAGCTATCAAGAATGCAGGATTTACAATCTTATACGACCTCAATGTAAG TTACGTAATTATATTATCATATGAATAGGTGCCAAACTGCAAATATTTTTCTCAAATATATCCCGATGACCTACTTTTTG ACGGTTTTGCATTGTGAATATAATAGGTATGCAGGGTGATATTTGGCAAGATGAGCATTATAGAAGTAAATGTAGAATGG TTCACGCAATCACAATTTCGTTACATGTAGCGATTATATGTTTGTTTCCATGTGTGTAAGAATGATTGGGTGTTTGATAT TTTCTCTTACAGTTGATTCTAGTTCGAAGCTATAAATCCTAGCTTCTGAGGTGGACATAATCAATCATGCGATTTCATAA CTGGATTTTATAGAAATATATACCGACATCTTTTTTCTCATAAATCTATCTAAACATAAATCACTTTTTAACTTACTTTT ATCATGAATTATTTTACTAGGATTAATTCTTTCTATAATAAATTTTTGAACAGTGATCTAAACATGTACATATAGTGCAC AAGGCAATTATTATAATTAATACTGTTCAATTTTATGACAAATTTTTAAAGATACAAGCATCATTGTTTTAGTAAATTAG AATAGGACAATCCAAATATAAGCTTGCTTAACTCTCTTTTCATGAAAACCCTAATACTGAACTGTTCTTTCTGCTCTAAC CCCGTGTCTACCATCATCCTCCATACGTTGCCCAATTTTTCCCTCAATTAGGCCATTCATCTAATGTTCTCATATTCCAT CATTGACTCACCATTCCATGCCATCTTTAGTTCATCTCATCTACTCGTTGTCATGTTCCCTGTGCATATTCATGAATCAC GCCTTGCCTTCTCTCTCAATCCTTTTGCTGATTCACGCCTTAATTCCTCACTTTCTGTGTCTCAATACCTGAAGTTGGCT TGTGTTGCTTGGATTTGTTGGTTGAGATAAACTTTTTGGAGTACAGCATCTTTTTGTAGTTTCACTCAAAATTTGTTAGT GGGATTTTATAAACTTATTCTAAAATTATGTTTTTATTTTTCAATTTTTATTGTTAACCTTTCTTTTTGTCGATTTTTTT ATGGTTAGCCTAACTACCCAATTCAACCCAACACGTTCACACTCGAGTTGGGTTGTTTCAGGGTATGAATTGAAAATTGA AACATGAGAAGAGGTGGGGGCGCAGACGCAGTAAGTTGAATTGTGTGTGTCACTATCAGAAATTTGGTGAGAGAGCCCAC TTCTACGCTTTTGAGAGGAAGAGAGTTGATGGTTGCCTTTTGTGGGGGAATCTCTTGTGCTAGTTGCCAAGACCTAGGAG ATCTAGCATTTGACTACTTTTTTGGGACATTCTCTTTGCTTTTGCTTCTCTCTTAGGCATGTTATAGTTAATTACTACTT GAATATGAATCACATTCCAAACAAAACCACTCATTACCTATCTATGCTTAAGAGAAAGACAATGGAGCCAACCTTACTAA GCGTTCGTTGAAACGTTTTAAACTATTCTAACTGGATCCTTCAAGGGTTATATCTAACACCATAAGATATAAGATGCATT ATTACTTAATACATTTATACACACCACCATCAACGACAAAAACAACAACCTCATACCACTAATCAAAAAAAAAAAAACTA ATTATGACCCACTATATGGATCATCTCATGTTATTGTGCTTGATCAAAAATCATTTTTTTATCGGATGTTATTGACTATA CGGTTGTTTTTAATATCTTTCAACGTCCTTTTTTGTTTCTATATCAACTTTCATATGACTAAAAATCATGTTATTAATCG TTTTCATAGGTGTCTCCAATGATCTTCTTTGTACATGTTTGAACGATCTTAATTGATTTTTTATCACCTTAGGTGTCACA TCAATATCTGTTCTTATCTGATCATTCATCATTGTGTATCTTCTTAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0428600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACACGGTGAAAAGGGACGACCCTTCAAAAAGCACAAAGGCTCATCCAAATTCGAAGATCCCCGGAAAGGATTCGC CGAAGATGACGATGTATATGGCGGCGATGATGCCCACGATGATGACGAAGGAAAAACCAAAGATTTTAGCAAATTAGAGT TGAAACCAGATCACCAGAATCGCCCTCTCTGGGCTTGTGGCAATGGCCGCATATTCCTTGAGACCTTCTCTCCTTTGTAC AAACAAGCTTATGATTTTCTCATCGCCATCGCCGAGCCCGTTTGCAGGCCGGAGTCAATGCATGAGTACAATCTTACTCC GCACTCGCTGTATGCTGCCGTTTCGGTTGGTCTAGAAACAGAAACAATCATAGCTGTTTTGAACAAGTTATCCAAGACCA AGCTTCCTAAAGATATGATTAAATTTATACATGATTCCACTGCAAATTATGGCAAAGTGAAGCTTGTTCTTAAGAAGAAT CGCTACCTTGTTGAATCTCCATTTCCAGAAGTGTTGAAGACACTGCTCAGGGATGGAGTTATATCTCGAGCAAGGATTAC TTCTGAGGGTGCAAATGGAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACCCATGATGAGTTGATAA ATGAAGCAGAAGTGGCAGCAGTTGCAGAAGAGAAAGAAGCTCATTCGTTTGAAATTGATCCTGCTCAGGTTGAAAATGTA AAACAGCGTTGCCTGCCAAATGCATTAAATTTTCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAACCCAGA CCTTGACATGGAACTAAAGCCTCAGGCACAACCTCGACCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTA GAGCAAGATCTGGTATCATAGTTCTACCCTGTGGTGCTGGAAAGTCCCTTGTTGGTGTTTCTGCTGCTTGCCGGATAAAA AAGAGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTCCAGTTTAAACTATGGTCAACTATTCG AGAAGAACAAATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACCTATA ATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATTATTGAGGAAATAAGAAACAGAGAATGGGGATTG CTTCTCATGGACGAGGTGCATGTGGTTCCAGCCCATATGTTTCGGAAAGTTATTAGCATCACTAAGTCTCATTGCAAACT TGGGCTCACAGCTACACTTGTGAGAGAGGATGAACGGATTACAGATCTGAATTTCCTAATTGGTCCCAAGCTGTACGAGG CAAATTGGTTAGATCTTGTAAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGCCCAATGACAAAGGAG TTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGC ATGTGAATTCCTCATTAACTATCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCA CTGAGTATGCTATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACATGCA TTCAAAACTAGCAAGGAAGTAAATACTGTTTTTCTTTCCAAGGTTGGTGACAACTCAATCGATATTCCTGAAGCAAATGT GATAATTCAGATCTCTTCACATGCTGGTTCAAGGCGTCAAGAAGCTCAACGTTTGGGTCGTATTCTTAGGGCAAAGGGAA AGATTGAGGATAGGATGGCAGGGGGTAAGGAGGAGTATAATGCATTCTTTTATTCCCTCGTGTCAACTGATACCCAGGAG ATGTATTACTCAACTAAGAGGCAGCAATTTCTAATTGATCAGGGTTACAGTTTTAAGGTAATTACAAGCTTGCCTCCATC CGATGAAGGATCTCGTTTGAGCTATCATCATCTTGAGGATCAGTTGGCTCTTCTTGGAAAGGTATTGAGTGCTGGTGATG ATGCGGTTGGGTTAGAACAACTAGAAGAAGACACAGATGAAATAGCTCTTAACAGTGCCCGTCGTTCTCATGGATCCATG AGTGCCATGTCAGGTGCAAAGGGGATGGTTTATATGGAGTACAGTACTGGGCGTAAAGGCCAAGGACAGATTAAGAGCAA GCCGAAAGATCCAGCAAAGAGACACTTCTTATTTAAAAGACGATTTGGCGCAAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0428600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGHGEKGRPFKKHKGSSKFEDPRKGFAEDDDVYGGDDAHDDDEGKTKDFSKLELKPDHQNRPLWACGNGRIFLETFSPLY KQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKDMIKFIHDSTANYGKVKLVLKKN RYLVESPFPEVLKTLLRDGVISRARITSEGANGDGFTISKAAGEIEGTHDELINEAEVAAVAEEKEAHSFEIDPAQVENV KQRCLPNALNFPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK KSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL LLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE FFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILHA FKTSKEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKIEDRMAGGKEEYNAFFYSLVSTDTQE MYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLSYHHLEDQLALLGKVLSAGDDAVGLEQLEEDTDEIALNSARRSHGSM SAMSGAKGMVYMEYSTGRKGQGQIKSKPKDPAKRHFLFKRRFGAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 52 52 - –
MobiDBLite
mobidb-lite
14 52 39 - –
PANTHER
PTHR11274:SF0
43 759 717 0.0 –
PANTHER
PTHR11274
43 759 717 0.0 –
TIGRFAM
TIGR00603
48 760 713 0.0
IPR001161
PRINTS
PR00851
61 81 21 2.3E-148 –
Pfam
PF13625
63 186 124 2.7E-34
IPR032830
PRINTS
PR00851
147 166 20 2.3E-148 –
SUPERFAMILY
SSF52540
240 453 214 1.2E-33
IPR027417
PRINTS
PR00851
259 285 27 2.3E-148 –
Gene3D
G3DSA:3.40.50.300
267 459 193 7.2E-34 –
CDD
cd18029
270 439 170 2.11463E-101 –
SMART
SM00487
274 455 182 7.8E-20
IPR014001
Pfam
PF04851
277 433 157 7.0E-14
IPR006935
ProSiteProfiles
PS51192
289 451 163 17.696
IPR014001
PRINTS
PR00851
290 312 23 2.3E-148 –
SUPERFAMILY
SSF52540
387 709 323 2.02E-29
IPR027417
PRINTS
PR00851
397 417 21 2.3E-148 –
Pfam
PF16203
459 707 249 1.4E-113
IPR032438
Gene3D
G3DSA:3.40.50.300
460 701 242 1.6E-63 –
PRINTS
PR00851
463 485 23 2.3E-148 –
CDD
cd18789
470 634 165 1.86001E-83 –
PRINTS
PR00851
501 516 16 2.3E-148 –
ProSiteProfiles
PS51194
506 672 167 12.043
IPR001650
PRINTS
PR00851
521 543 23 2.3E-148 –
SMART
SM00490
534 612 79 5.2E-9
IPR001650
PRINTS
PR00851
568 586 19 2.3E-148 –
PRINTS
PR00851
587 612 26 2.3E-148 –
PRINTS
PR00851
624 647 24 2.3E-148 –
PRINTS
PR00851
715 734 20 2.3E-148 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006289
Biological process Nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Subterm of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0428600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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