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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007860
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.968s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0246860.1
n.a. PREDICTED: DNA mismatch repair protein MSH7-like [Cicer arietinum] gi|502163835|ref|XP_004512965.1| chr1 2540574 2550099 -
3 domain predictions
3 GO terms
Lj1g3v4862830.1
n.a. PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max] gi|356572787|ref|XP_003554547.1| chr1 58814287 58817965 +
4 domain predictions
3 GO terms
Lj2g3v0777050.2
n.a. PREDICTED: DNA mismatch repair protein MSH7-like [Cicer arietinum] gi|502163835|ref|XP_004512965.1| chr2 12240660 12242563 -
2 domain predictions
3 GO terms
Lj4g3v1787050.1
n.a. PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max] gi|356563103|ref|XP_003549805.1| chr4 25306737 25315127 +
2 domain predictions
3 GO terms
Lj5g3v2013910.1
n.a. PREDICTED: DNA mismatch repair protein MSH3-like isoform X1 [Cicer arietinum] gi|502119328|ref|XP_004496581.1| chr5 28409777 28419188 +
4 domain predictions
3 GO terms
LotjaGi1g1v0760200.1
n.a. DNA mismatch repair protein MutS; TAIR: AT4G02070.1 MUTS homolog 6; Swiss-Prot: sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6; TrEMBL-Plants: tr|A0A151RYF4|A0A151RYF4_CAJCA DNA mismatch repair protein Msh6-1; Found in the gene: LotjaGi1g1v0760200 LjG1.1_chr1 133338082 133347110 +
2 domain predictions
3 GO terms
LotjaGi2g1v0214200.1
n.a. DNA mismatch repair protein mutS; TAIR: AT3G24495.1 MUTS homolog 7; Swiss-Prot: sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7; TrEMBL-Plants: tr|G7KNH7|G7KNH7_MEDTR DNA mismatch repair protein msh6; Found in the gene: LotjaGi2g1v0214200 LjG1.1_chr2 66421309 66429898 -
2 domain predictions
3 GO terms
LotjaGi4g1v0263800.1
n.a. DNA mismatch repair protein mutS; TAIR: AT3G18524.1 MUTS homolog 2; Swiss-Prot: sp|O24617|MSH2_ARATH DNA mismatch repair protein MSH2; TrEMBL-Plants: tr|I1MUG2|I1MUG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0263800 LjG1.1_chr4 62763417 62772329 +
2 domain predictions
3 GO terms
LotjaGi4g1v0263800.2
n.a. DNA mismatch repair protein mutS; TAIR: AT3G18524.1 MUTS homolog 2; Swiss-Prot: sp|O24617|MSH2_ARATH DNA mismatch repair protein MSH2; TrEMBL-Plants: tr|I1MUG2|I1MUG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0263800 LjG1.1_chr4 62764750 62771629 +
2 domain predictions
3 GO terms
LotjaGi5g1v0301900.1
n.a. DNA mismatch repair protein mutS; TAIR: AT4G25540.1 homolog of DNA mismatch repair protein MSH3; Swiss-Prot: sp|O65607|MSH3_ARATH DNA mismatch repair protein MSH3; TrEMBL-Plants: tr|A0A072VPI7|A0A072VPI7_MEDTR DNA mismatch repair MSH3-like protein; Found in the gene: LotjaGi5g1v0301900 LjG1.1_chr5 61884587 61893995 +
2 domain predictions
3 GO terms