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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1787050 |
| Transcript ID | Lj4g3v1787050.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max] gi|356563103|ref|XP_003549805.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 932 | 930 | 0 | ||
| PANTHER | 3 | 932 | 930 | 0 | – | |
| PIRSF | 6 | 940 | 935 | 0 | ||
| Pfam | 22 | 127 | 106 | 4.80E-15 | ||
| Pfam | 142 | 282 | 141 | 2.50E-17 | ||
| Gene3D | 292 | 492 | 201 | 5.50E-49 | – | |
| SUPERFAMILY | 296 | 610 | 315 | 1.31E-66 | ||
| Pfam | 298 | 605 | 308 | 8.00E-36 | ||
| SMART | 313 | 641 | 329 | 1.20E-103 | ||
| Coils | 369 | 389 | 21 | – | – | |
| Pfam | 468 | 565 | 98 | 1.80E-17 | ||
| Coils | 472 | 495 | 24 | – | – | |
| Coils | 552 | 572 | 21 | – | – | |
| SUPERFAMILY | 615 | 860 | 246 | 6.11E-50 | ||
| Gene3D | 615 | 859 | 245 | 3.10E-72 | ||
| CDD | 629 | 859 | 231 | 5.40E-147 | – | |
| SMART | 658 | 856 | 199 | 4.30E-118 | ||
| Pfam | 661 | 859 | 199 | 8.60E-80 | ||
| ProSitePatterns | 739 | 755 | 17 | – | ||
| Coils | 912 | 932 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. | ||
| Molecular function | Mismatched DNA binding | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. | ||
| Cellular component | Mismatch repair complex | Any complex formed of proteins that act in mismatch repair. |
Expression pattern of Lj4g3v1787050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1787050.1, powered by CORGI.
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