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Lj1g3v0246860.1

Overview

Field Value
Gene ID Lj1g3v0246860
Transcript ID Lj1g3v0246860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA mismatch repair protein MSH7-like [Cicer arietinum] gi|502163835|ref|XP_004512965.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 36 36 – –
PANTHER
PTHR11361:SF31
37 1003 967 0 –
PANTHER
PTHR11361
37 1003 967 0 –
SUPERFAMILY
SSF55271
162 283 122 2.09E-27
IPR016151
Gene3D
G3DSA:3.40.1170.10
162 288 127 2.40E-29
IPR016151
Pfam
PF01624
176 286 111 1.20E-31
IPR007695
SUPERFAMILY
SSF53150
294 357 64 3.79E-06
IPR007860
Pfam
PF05188
296 375 80 8.50E-10
IPR007860
SUPERFAMILY
SSF53150
389 472 84 3.79E-06
IPR007860
Gene3D
G3DSA:1.10.1420.10
456 631 176 5.20E-34 –
SUPERFAMILY
SSF48334
460 684 225 7.06E-32
IPR007696
Pfam
PF05192
463 680 218 1.30E-30
IPR007696
SMART
SM00533
477 724 248 2.20E-16
IPR007696
SUPERFAMILY
SSF52540
706 945 240 5.95E-46
IPR027417
Gene3D
G3DSA:3.40.50.300
706 945 240 1.00E-65
IPR027417
CDD
cd03286
712 936 225 5.96E-120 –
SMART
SM00534
745 941 197 7.60E-107
IPR000432
Pfam
PF00488
749 944 196 6.20E-77
IPR000432
ProSitePatterns
PS00486
826 842 17 –
IPR000432

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006298
Biological process Mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
Subterm of
GO:0030983
Molecular function Mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
Subterm of

Genome browser

LORE1 insertions 65

Expression data

Expression pattern

Expression pattern of Lj1g3v0246860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0246860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.