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Lj1g3v4831840.1

Overview

Field Value
Gene ID Lj1g3v4831840
Transcript ID Lj1g3v4831840.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51714
1 112 112 13.886
IPR030387
PANTHER
PTHR12858
1 577 577 0 –
PANTHER
PTHR12858:SF2
1 577 577 0 –
SUPERFAMILY
SSF52540
1 79 79 7.49E-07
IPR027417
Gene3D
G3DSA:3.40.50.300
1 77 77 6.00E-16
IPR027417
Pfam
PF08142
92 177 86 2.30E-32
IPR012948
SMART
SM00785
92 178 87 3.40E-47
IPR012948
MobiDBLite
mobidb-lite
299 338 40 – –
MobiDBLite
mobidb-lite
361 402 42 – –
SMART
SM01362
547 875 329 1.20E-143
IPR007034
Pfam
PF04950
554 876 323 1.10E-88
IPR007034
MobiDBLite
mobidb-lite
572 602 31 – –
PANTHER
PTHR12858
597 1044 448 0 –
PANTHER
PTHR12858:SF2
597 1044 448 0 –
MobiDBLite
mobidb-lite
941 968 28 – –
Coils
Coil
989 1026 38 – –
MobiDBLite
mobidb-lite
991 1044 54 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0042254
Biological process Ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v4831840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4831840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.