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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013128
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 43 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.558s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000069.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905112|dbj|BAF56429.1| chr0 12894 14037 -
2 domain predictions
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Lj0g3v0055079.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356572872|ref|XP_003554589.1| chr0 17728277 17733704 +
2 domain predictions
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Lj0g3v0101249.1
n.a. Senescence-associated gene 12 [Theobroma cacao] gi|508702326|gb|EOX94222.1| chr0 42921000 42924125 +
2 domain predictions
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Lj0g3v0162449.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr0 76605876 76607494 +
2 domain predictions
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Lj0g3v0178109.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr0 86275384 86276573 +
2 domain predictions
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Lj0g3v0231969.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 120379854 120381189 -
2 domain predictions
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Lj0g3v0259509.1
n.a. PREDICTED: cysteine proteinase 15A [Glycine max] gi|356564325|ref|XP_003550405.1| chr0 134891666 134894781 +
2 domain predictions
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Lj0g3v0259509.2
n.a. PREDICTED: cysteine proteinase 15A [Glycine max] gi|356564325|ref|XP_003550405.1| chr0 134893168 134894781 +
2 domain predictions
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Lj0g3v0275839.1
n.a. n.a. chr0 143067779 143070809 +
2 domain predictions
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Lj0g3v0275859.1
n.a. PREDICTED: KDEL-tailed cysteine endopeptidase CEP2-like [Cicer arietinum] gi|502143938|ref|XP_004505522.1| chr0 143071113 143072335 -
2 domain predictions
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Lj0g3v0276819.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Fragaria vesca subsp]. vesca] gi|470110251|ref|XP_004291399.1| chr0 143674375 143676123 +
2 domain predictions
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Lj0g3v0287639.1
n.a. cysteine proteinase precursor [Glycine max] gi|351721126|ref|NP_001237199.1| chr0 149461775 149465973 +
2 domain predictions
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Lj0g3v0300649.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156238301 156238750 +
2 domain predictions
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Lj0g3v0300659.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr0 156241215 156242388 +
2 domain predictions
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Lj0g3v0314599.1
n.a. papain-like cysteine proteinase-like protein 1 [Lotus japonicus] gi|33945877|emb|CAE45588.1| chr0 164219667 164220887 +
2 domain predictions
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Lj0g3v0357679.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356515086|ref|XP_003526232.1| chr0 188313006 188313314 +
2 domain predictions
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Lj1g3v1686700.1
n.a. PREDICTED: cysteine proteinase RD21a-like isoform X1 [Cicer arietinum] gi|502120445|ref|XP_004496965.1| chr1 20009725 20010039 +
2 domain predictions
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Lj1g3v1686730.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cicer arietinum] gi|502125689|ref|XP_004499026.1| chr1 20018364 20020712 +
2 domain predictions
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Lj1g3v2126000.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Glycine max] gi|356563584|ref|XP_003550041.1| chr1 25471394 25473788 -
2 domain predictions
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Lj1g3v2139680.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr1 25694581 25697260 -
2 domain predictions
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Lj1g3v2140860.1
n.a. PREDICTED: cysteine proteinase RD19a-like [Glycine max] gi|356509908|ref|XP_003523684.1| chr1 25764771 25767284 +
2 domain predictions
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Lj1g3v3404280.1
n.a. PREDICTED: xylem cysteine proteinase 2-like [Glycine max] gi|356517188|ref|XP_003527271.1| chr1 39208042 39209908 +
2 domain predictions
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Lj1g3v4047190.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47739823 47741197 -
2 domain predictions
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Lj1g3v4047240.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr1 47761044 47762165 -
2 domain predictions
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Lj1g3v4047250.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47764683 47766120 -
2 domain predictions
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Lj1g3v4047270.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905108|dbj|BAF56428.1| chr1 47769409 47770624 -
2 domain predictions
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Lj1g3v4047290.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905116|dbj|BAF56430.1| chr1 47773952 47775075 -
2 domain predictions
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Lj1g3v4819970.1
n.a. PREDICTED: cathepsin B-like [Glycine max] gi|356505709|ref|XP_003521632.1| chr1 58150447 58154358 +
2 domain predictions
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Lj3g3v0129310.1
n.a. CM0216.510.nc [Lotus japonicus] gi|164605519|dbj|BAF98585.1| chr3 977264 979016 +
2 domain predictions
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Lj3g3v0129320.1
n.a. CM0216.500.nc [Lotus japonicus] gi|164605518|dbj|BAF98584.1| chr3 983337 984924 +
2 domain predictions
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Lj3g3v1641950.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr3 20904157 20905269 +
2 domain predictions
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Lj3g3v1642060.1
n.a. cysteine proteinase [Lotus japonicus] gi|144905104|dbj|BAF56427.1| chr3 20939116 20940233 +
2 domain predictions
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Lj4g3v1388240.1
n.a. cysteine proteinase [Lotus japonicus] gi|409190991|gb|AFV30165.1| chr4 21268146 21274147 +
2 domain predictions
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Lj4g3v1399930.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356563155|ref|XP_003549830.1| chr4 22040915 22042618 -
2 domain predictions
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Lj4g3v1399950.1
n.a. PREDICTED: vignain-like [Glycine max] gi|356563155|ref|XP_003549830.1| chr4 22045501 22047303 -
2 domain predictions
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Lj4g3v2203610.1
n.a. cysteine protease [Medicago sativa] gi|94420703|gb|ABF18679.1| chr4 30309164 30312174 -
2 domain predictions
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Lj5g3v0294860.1
n.a. PREDICTED: cysteine proteinase RD21a-like [Cicer arietinum] gi|502125689|ref|XP_004499026.1| chr5 2628473 2632929 +
2 domain predictions
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Lj5g3v1794680.1
n.a. cysteine proteinase precursor [Phaseolus vulgaris] gi|2511695|emb|CAB17077.1| chr5 25566466 25567489 +
2 domain predictions
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Lj5g3v2133770.1
n.a. PREDICTED: cysteine proteinase RD21a-like isoform X1 [Cicer arietinum] gi|502120445|ref|XP_004496965.1| chr5 30633092 30635902 -
2 domain predictions
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Lj6g3v0920720.1
n.a. PREDICTED: oryzain alpha chain-like [Cicer arietinum] gi|502131381|ref|XP_004500967.1| chr6 9425436 9426191 -
2 domain predictions
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Lj6g3v1995740.2
n.a. Cysteine proteinase [Medicago truncatula] gi|357446993|ref|XP_003593772.1| chr6 23120617 23122406 -
2 domain predictions
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Lj6g3v1995750.1
n.a. Cysteine proteinase [Medicago truncatula] gi|357446993|ref|XP_003593772.1| chr6 23123100 23124553 -
2 domain predictions
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Lj6g3v1995800.1
n.a. PREDICTED: LOW QUALITY PROTEIN: xylem cysteine proteinase 1-like [Cicer arietinum] gi|502078248|ref|XP_004485885.1| chr6 23148043 23149866 -
2 domain predictions
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