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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3404280 |
| Transcript ID | Lj1g3v3404280.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: xylem cysteine proteinase 2-like [Glycine max] gi|356517188|ref|XP_003527271.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 9 | 9 | – | – | |
| PANTHER | 8 | 348 | 341 | 6.00E-235 | ||
| PANTHER | 8 | 348 | 341 | 6.00E-235 | – | |
| Phobius | 10 | 21 | 12 | – | – | |
| Gene3D | 14 | 347 | 334 | 3.50E-118 | – | |
| Phobius | 22 | 25 | 4 | – | – | |
| Phobius | 26 | 350 | 325 | – | – | |
| SUPERFAMILY | 43 | 347 | 305 | 1.22E-110 | – | |
| SMART | 48 | 104 | 57 | 1.00E-24 | ||
| Pfam | 48 | 104 | 57 | 2.10E-18 | ||
| Pfam | 132 | 347 | 216 | 4.00E-81 | ||
| SMART | 132 | 347 | 216 | 1.90E-118 | ||
| CDD | 133 | 346 | 214 | 4.63E-110 | – | |
| PRINTS | 150 | 165 | 16 | 1.00E-07 | ||
| ProSitePatterns | 150 | 161 | 12 | – | ||
| ProSitePatterns | 290 | 300 | 11 | – | ||
| PRINTS | 292 | 302 | 11 | 1.00E-07 | ||
| ProSitePatterns | 307 | 326 | 20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of Lj1g3v3404280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3404280.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.