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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2203610 |
| Transcript ID | Lj4g3v2203610.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | cysteine protease [Medicago sativa] gi|94420703|gb|ABF18679.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 6 | 17 | 12 | – | – | |
| Coils | 13 | 13 | 1 | – | – | |
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 364 | 342 | – | – | |
| PANTHER | 49 | 363 | 315 | 3.30E-147 | – | |
| PANTHER | 49 | 363 | 315 | 3.30E-147 | ||
| Gene3D | 58 | 363 | 306 | 6.20E-106 | – | |
| SUPERFAMILY | 60 | 362 | 303 | 1.59E-105 | – | |
| SMART | 65 | 121 | 57 | 7.10E-20 | ||
| Pfam | 65 | 121 | 57 | 1.80E-14 | ||
| Pfam | 147 | 362 | 216 | 5.30E-77 | ||
| SMART | 147 | 362 | 216 | 3.10E-104 | ||
| CDD | 148 | 361 | 214 | 8.74E-109 | – | |
| PRINTS | 165 | 180 | 16 | 2.20E-09 | ||
| ProSitePatterns | 309 | 319 | 11 | – | ||
| PRINTS | 311 | 321 | 11 | 2.20E-09 | ||
| PRINTS | 326 | 332 | 7 | 2.20E-09 | ||
| ProSitePatterns | 326 | 345 | 20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of Lj4g3v2203610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2203610.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.