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Lj1g3v2126000.1

Overview

Field Value
Gene ID Lj1g3v2126000
Transcript ID Lj1g3v2126000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cysteine proteinase RD21a-like [Glycine max] gi|356563584|ref|XP_003550041.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12411:SF349
1 285 285 1.40E-206 –
PANTHER
PTHR12411
1 285 285 1.40E-206
IPR013128
SUPERFAMILY
SSF54001
2 285 284 6.22E-106 –
Gene3D
G3DSA:3.90.70.10
2 285 284 4.60E-113 –
Pfam
PF08246
4 60 57 2.50E-16
IPR013201
SMART
SM00848
4 60 57 4.40E-25
IPR013201
Pfam
PF00112
96 285 190 1.60E-75
IPR000668
SMART
SM00645
96 285 190 5.70E-103
IPR000668
CDD
cd02248
97 285 189 1.68E-97 –
PRINTS
PR00705
114 129 16 6.70E-11
IPR000668
ProSitePatterns
PS00139
114 125 12 –
IPR000169
ProSitePatterns
PS00639
254 264 11 –
IPR025660
PRINTS
PR00705
256 266 11 6.70E-11
IPR000668
PRINTS
PR00705
271 277 7 6.70E-11
IPR000668

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008234
Molecular function Cysteine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj1g3v2126000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2126000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.