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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016061
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.445s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4830240.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr1 58320838 58325597 -
4 domain predictions
5 GO terms
Lj2g3v1468010.1
n.a. PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| chr2 23284510 23286437 +
4 domain predictions
5 GO terms
LotjaGi1g1v0754600.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132761414 132767262 -
3 domain predictions
5 GO terms
LotjaGi1g1v0754600.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 LjG1.1_chr1 132762655 132766913 -
3 domain predictions
5 GO terms
LotjaGi2g1v0122700.1
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7C4B0|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130518 45136183 +
3 domain predictions
5 GO terms
LotjaGi2g1v0122700.2
n.a. Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1L332|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 LjG1.1_chr2 45130990 45135791 +
3 domain predictions
5 GO terms
LotjaGi2g1v0330900.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900 LjG1.1_chr2 80651732 80653697 +
3 domain predictions
5 GO terms
LotjaGi6g1v0009800.1
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1846797 +
3 domain predictions
5 GO terms
LotjaGi6g1v0009800.2
n.a. Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 LjG1.1_chr6 1842035 1847268 +
3 domain predictions
5 GO terms