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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0330900 |
| Transcript ID | LotjaGi2g1v0330900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80651732..80653697) extracted from Lotus japonicus Gifu genome v1.2.
GCGCCACCGTCGCCGGCATCGGAGTCACGCCGTTCAGAATGGCGGGAAGCGAAGCCGAGAAACCTTCAACGCAGCAACAA GAAGAGACTGGCTTGGGGCTCACGCATCGGAAGGCAGAGAATTTTGGAGAGTGGTACTCTGAGGTAGTCGTGAATGCCGA ATTGATCGAGTACTACGATATCTCTGGCTGCTACATTCTCAGACCATGGTCAATTTCAACCTGGGAGATACTACAAACTT TCTTCGATTCACAAATCAAGAAGATGAAGGTCAAGAACTGCTACTTCCCACTGTTCGTGAATCGCGGTGTTCTGGATCAC GTTGAGGGGTTTTCACCAGAGGTTGCTTGGGTAACAAAATCCGGTAAAACTGTGTTGGAGAATCCAATTGCAATTCGCCC TACCAGTGAAACTGTGATGTATCCCTATTTCTCCAAGTGGATTAGAGGGCACCGTGATTTGCCAATGAAACTGAATCAGT GGTGCAGTGTGGTTAGATGGGAGAGTAATCCTATGCCATTCATTCGGAGTTGCGAGTTTCTCTGGCAGGAAGGGCACTCT GCTTTTGCAACCAAGGAGGAAGCAGATGCTGAGGTTCTTGAGATACTGGAATTGTATAGGTGTATATATGAAGAGTATTT GGCTGTTCCTGTCATAAAGGGGAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGCACTTTACACTACCAGTGTTGAGGTAC ATACTTCTTTCACATTCTTCTCAATTACTGATATATATATATATTGTTTGAAGGCCTGATTACACTTTTGGTTTTCACAA TGCGTGATTTTGGTCTATATCGCTTTAAGTTCTACTATTAAAATTGAACAAATTTGATCTACATATTAGCTTTTCATTCA ATTAGTAATGAAAAATTTTGATGTGGATCACATTTTTTAAGGTTAATGACATTTTAAGACAAATTGTCACTTTCGACATA GAAAATTGTGATATATCAATTTCTTCGTTAGTTATTGAGTGAAAAGCTAAGAGCGGATCAAATGGGACTCAACTTGAGCA ATTGAAACTATAGGTACCAAAATTGTGCATTTGTGAGACTAGAGACAAAAGTAAGCTTTGTTTGAATGTTGAAAAGTTGT TTACAAAATTTTGATGTTGGATTTTGCTAGGCATTTATTCCAAACACAGGTCGTGGTATACAAGGTGCAACTTCTCATTG TCTGGGCCAAAATTTTGCTAAGATGTTTGAGATAAACTTTGAAAATGACAAGGGAGAGAAAGCAATGGTGTGGCAGAACT CATGGGCCTACAGTACTCGAACTATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTGGTGCTGCCTCCAAAA GTAGCATCAGTTCAAGTCATAGTGATTCCCGTGCCTTACAAAGGTGCTGATACTCAAGGAATCAATGATGCCTGTTCTGC AACTGTGGTTACATTATGCGAGGCAGGTATTCGCGCTGAGTTGGATTCTAGAGATGACTATCTTCCTGGGTGGAAACATT CTCACTGGGAAATGAAAGGTGTTCCTCTAAGAATAGAGATTGGGCTTAAGGATTTGGCAAATAAGCAGGTCCGCGCTGTT CGACGCGATAATGGAGAAAAGATAGACATTGCTAATGAAGATTTGGTTGAGGAATTGAAGAAGTTGCTGGATGATATTCA GCAGAATCTTTTTGATGTTGCCAAACAAAAGCGAGATGAATGTGTTCAGGTCATACATTCATGGGATGAGTTTGTACAAG CTTTGAACCAGAGAAAGATGATCTTAGCACCTTGGTGTGATGAGGAGGAGGTGGAAGAAGATGTCAAAGCAAGGACAGAG GGCGAGATGGGAGCAGCAAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCTGAAGGAACGATATGCTTTGCTTC AGGAAGGCCTGCCACAAAGTGGACATACTGGGGCAGAAGTTACTAG
CDS sequence (LotjaGi2g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGAAGCGAAGCCGAGAAACCTTCAACGCAGCAACAAGAAGAGACTGGCTTGGGGCTCACGCATCGGAAGGCAGA GAATTTTGGAGAGTGGTACTCTGAGGTAGTCGTGAATGCCGAATTGATCGAGTACTACGATATCTCTGGCTGCTACATTC TCAGACCATGGTCAATTTCAACCTGGGAGATACTACAAACTTTCTTCGATTCACAAATCAAGAAGATGAAGGTCAAGAAC TGCTACTTCCCACTGTTCGTGAATCGCGGTGTTCTGGATCACGTTGAGGGGTTTTCACCAGAGGTTGCTTGGGTAACAAA ATCCGGTAAAACTGTGTTGGAGAATCCAATTGCAATTCGCCCTACCAGTGAAACTGTGATGTATCCCTATTTCTCCAAGT GGATTAGAGGGCACCGTGATTTGCCAATGAAACTGAATCAGTGGTGCAGTGTGGTTAGATGGGAGAGTAATCCTATGCCA TTCATTCGGAGTTGCGAGTTTCTCTGGCAGGAAGGGCACTCTGCTTTTGCAACCAAGGAGGAAGCAGATGCTGAGGTTCT TGAGATACTGGAATTGTATAGGTGTATATATGAAGAGTATTTGGCTGTTCCTGTCATAAAGGGGAAGAAAAGTGAGCTTG AGAAGTTTGCTGGTGCACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACAGGTCGTGGTATACAAGGTGCAACT TCTCATTGTCTGGGCCAAAATTTTGCTAAGATGTTTGAGATAAACTTTGAAAATGACAAGGGAGAGAAAGCAATGGTGTG GCAGAACTCATGGGCCTACAGTACTCGAACTATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTGGTGCTGC CTCCAAAAGTAGCATCAGTTCAAGTCATAGTGATTCCCGTGCCTTACAAAGGTGCTGATACTCAAGGAATCAATGATGCC TGTTCTGCAACTGTGGTTACATTATGCGAGGCAGGTATTCGCGCTGAGTTGGATTCTAGAGATGACTATCTTCCTGGGTG GAAACATTCTCACTGGGAAATGAAAGGTGTTCCTCTAAGAATAGAGATTGGGCTTAAGGATTTGGCAAATAAGCAGGTCC GCGCTGTTCGACGCGATAATGGAGAAAAGATAGACATTGCTAATGAAGATTTGGTTGAGGAATTGAAGAAGTTGCTGGAT GATATTCAGCAGAATCTTTTTGATGTTGCCAAACAAAAGCGAGATGAATGTGTTCAGGTCATACATTCATGGGATGAGTT TGTACAAGCTTTGAACCAGAGAAAGATGATCTTAGCACCTTGGTGTGATGAGGAGGAGGTGGAAGAAGATGTCAAAGCAA GGACAGAGGGCGAGATGGGAGCAGCAAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCTGAAGGAACGATATGC TTTGCTTCAGGAAGGCCTGCCACAAAGTGGACATACTGGGGCAGAAGTTACTAG
Protein sequence (LotjaGi2g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSEAEKPSTQQQEETGLGLTHRKAENFGEWYSEVVVNAELIEYYDISGCYILRPWSISTWEILQTFFDSQIKKMKVKN CYFPLFVNRGVLDHVEGFSPEVAWVTKSGKTVLENPIAIRPTSETVMYPYFSKWIRGHRDLPMKLNQWCSVVRWESNPMP FIRSCEFLWQEGHSAFATKEEADAEVLEILELYRCIYEEYLAVPVIKGKKSELEKFAGALYTTSVEAFIPNTGRGIQGAT SHCLGQNFAKMFEINFENDKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKGADTQGINDA CSATVVTLCEAGIRAELDSRDDYLPGWKHSHWEMKGVPLRIEIGLKDLANKQVRAVRRDNGEKIDIANEDLVEELKKLLD DIQQNLFDVAKQKRDECVQVIHSWDEFVQALNQRKMILAPWCDEEEVEEDVKARTEGEMGAAKTLCSPFDQPELPEGTIC FASGRPATKWTYWGRSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 12 | 497 | 486 | 1.0E-297 | – | |
| PANTHER | 12 | 497 | 486 | 1.0E-297 | – | |
| Gene3D | 22 | 294 | 273 | 7.7E-104 | – | |
| Hamap | 22 | 497 | 476 | 36.193 | ||
| TIGRFAM | 24 | 497 | 474 | 5.5E-166 | ||
| SUPERFAMILY | 27 | 288 | 262 | 1.44E-68 | – | |
| CDD | 28 | 284 | 257 | 3.30939E-151 | ||
| ProSiteProfiles | 65 | 294 | 230 | 17.54 | ||
| Pfam | 117 | 282 | 166 | 5.9E-15 | ||
| SUPERFAMILY | 289 | 416 | 128 | 7.2E-29 | – | |
| CDD | 290 | 497 | 208 | 2.06601E-80 | – | |
| Gene3D | 295 | 415 | 121 | 1.0E-36 | ||
| Pfam | 301 | 397 | 97 | 1.3E-16 | ||
| Coils | 392 | 412 | 21 | - | – | |
| Gene3D | 418 | 497 | 80 | 3.8E-27 | ||
| SUPERFAMILY | 420 | 497 | 78 | 2.75E-18 | ||
| SMART | 424 | 497 | 74 | 1.4E-29 | ||
| Pfam | 424 | 497 | 74 | 7.5E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of LotjaGi2g1v0330900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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