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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0122700 |
| Transcript ID | LotjaGi2g1v0122700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9FYR6|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1L332|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45130990..45135791) extracted from Lotus japonicus Gifu genome v1.2.
TCTGAAGCTATGCTCTTTTACCCACCTCTTCTCCTCTCCCTCTTCCGCCACCATTCCTCGTCGTTCTCCGGCGTTCCTAC GGCGGCGCAGCCACTTTCATTTCCGGCCACGGCCGCTCGCCGCCTCCTTCTCCGCCCAAAGCGCGGCGTCGGACACACAG GACCGAGTCGACAACTCGAAGAACCGAGTCCCCGACCGAGTCATCACGCCCAGGTCACAGGACTTCAATGCGTGGTACCT TGATATCATAGCCAACGCCGAGCTTGCCGATTACGGTCCGGTTCGTGGCACCATGGTCATTCGTCCCTACGGTTACGCCA TTTGGGAATCAATTCAGGTTCCTTTTCAATTTCTTCAATTGTGCTGATTTTACTTTTTGAATTTGAATATTTTTTTTAAA TTTCTTTTTGGTTGTTCTTGCAGGACTTTTTGAATGTGAAGTTCAAGGAGACTGGGCATAGTAACATGTATTTTCCACAG GTAAAGGTTAACTACCATAGTTAATTAATGATTTTTTCTGTAATTTATTTTTTCTAGTGCACCCAACTTCAGTTTATGCA AGTAGTTTAAGTTTGCTTATTTAAGAAATTCACTAGGGGTTGCTGAGATGATTCAAGCTACTATGTTGATTTGAGGGTTT TCTTGGCTATGAAATCATTAATAGTTGAGAGGAGGATTTCAAATGGGTTGTAATGTTTCTTACTACACTGTAGGGCCTGT ACATGGTTATTACTATCTCCGGTCCTTTTTCTAAGAACCAAATAACTACCTCACGAGTCAATTAAGAATTATAGTTAATG TAGTTACTAGCATTGGATTTTTCCTCAATTCATATTAACTTCAGAAAATACCTTTTAACGCATTTACTTCGAAAATAGAA AGGGAGAGAGAGAGAGAGAGTCCAATTAGTGTGACACCCTTACTAGTAGAATTGAATAATAAAATAAGGGCATTTTTGTC AAAACAATAACTAATGCAGTACAAAATTCAAGCTGGTTCTTATAAAATGAACCAAGTTACTCCTCCAATTTGTTTTTTAT AGTAAGGACCGGATGTAGTATTACATTGTTTTCATAAGACTTGATAGACCTGCGGAAGGGAAGATATTTTGTTATTTCAG GGAGAATGTCTTTGACATGCAGTATATATCATGACCGCCACGTGAAATCACTTTGTCTATCATTTGTTTGATGCTTTTTC TCTATATGGTGCTGCAGTTTATCCCATACTCATTTATAGAGAAAGAAGCAAGTCATGTTGAGGGTTTCAGTCCTGAGCTA GCGCTAGTTACTATTGGGGGTGGAAAGGAACTTGAAGAGAAACTCGTGGTACGTATGTTCTTCAACCATTTGTTAGAGTT GCTTTCAATTGTATTTTTTTTCCTGTTTGTTGTAAACTGTAAGCTGAATTGAAGTCATTAATCATCTGCAATAGTGCAAT GTTGATTGAAAGGCTGTGACCTAAGGTTTTATCTTTGATTTTTGCACTTCTTGAGGCTATGGCAGGTGCGGCCTACAAGT GAAACCATTGTGAATCACATGTTCACTCAGTGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAACCAGGTAAATGC TGTTGTGGCTTTTTTGCCTTTTTATGATGGGACAACTCTACCAACTTTCTTTTGTCAAATGAATTTCGTTCAGTGGGCGA ATGTTACAAGATGGGAGATGCGCACTAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGTCATACTGCTCAT GCCACTCCAGAAGAGGCAGAAAATGAGGTCCACATCTTCTCTATATCAAAATGATAAAAGTCTTCACAAGTAAAATAGCA TAATCTTAGTAACAATTTTTTTCATTTGCAGGCTATACAGATGATTGACATTTATACGAAATTTGCATATGAGCAAACTG CAATACCTGTTATTCCAGGTCGCAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACTATTGAGGCTATG ATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACAACCTTGGGCAAAACTTTGCCCGTGCGTTTGGAACACTGGT CTGATATACTACATTCATTATTACAGATTATAAAATATCTCCTTCCTGTGGAGTAATGTTGTTGGTTTTTTGGATTTATC TGTCTACAATCTAATAAGTGTGTCGTGATATTATGTTTCCTGGCTTATTTATTTGGGCCTACAAAAGTATAAAACTACAT ATAAGAAAGCTTGATTGTGCAATCTCTTGCTATATTCTGTTATAACCCTCTGCTAACTCTGGAGTCTGGAATACCACCAT GACTTCTTACCTATTACTTATAAATTTGCTTCTTTGAGGTAAATAATCTCAAAGTTGCACCAAAATTAAAATTTCCCCCC TCTTTGGAGCTTTATGCTTAGAAGAAGGCGTACATCAGAAAATAAACTTTCTGACGTAGGATTAAGAAAGCTCTTTTATG CAATGTTTTAAAACCCAGACTGGTCAATGAACTGATGAAGGCAGTGATTCACGGTTCAACCAATATACATTTTAAACAAT GGGTAATATATTGAATATTTTATTAACTGATTTCATCTGTGTGTTTGTGCAGTTCACAGATGAAAATGGACAAAGGGAAT ACGTTTGGCAGACATCATGGGCGATAAGCACCCGTTTTGTTGGAGGTATCATCATGACACATGGGGATGATATAGGCCTA ATGCTCCCCCCCAAGATTGCACCGATACAGGTACATTTGGATGCTATTGGTATCTACTATCTAAGCCATGTGGTGTAACA TGATTGTTTGGTTAAATGTAGCTGTTGCTAGTTGGAACATTTTGCACCTTGGTTCGAAAAAGATGGTCAACATTCAACAA TGCATTGTTTGCTACTTTTGCTGCATAACTTCATAACCTATAACAGTCAATACAAACCTAATCTCATTATAGTGATGTAC TGATAAATAATTATAAGTTAAAAGTTGTCTATTTTGCAGTTTGTTAAAGTGCTGTGTTTTTAGTCCTCACGCCATTTTCT TCCATGAAACTGTTCTGCCTACAACTTCTAATTTATAAATATTTATTTATTTAAACATGTGAGTTGATTCATATTGTAAT ATCTCATTGGAAGTACCCCTGCATGGGAGTAGGAAGGTAATTTGTTCAATTCTATATTGATAGCATTGAAGAACCGTCAT TAAAAATAGTAAGTGATGCTTAGAAGGTTACTTGATACTTTTTCCTCTTATTTTTAAAATTTGAAAAATAAAGTGAATGC TTACTTGAAATGAAAAATCTATCTTTTTTCCACTGCAAAGTCCTAAATCCAAACATAGGACAATTTTATGCCTGTACATT CGAAAAACTCATATTGTAATTTAAATAAGCTATTCACATTTTCGGCAAATCATGTTCTGCATTGCCTGGTTTAGGTGGTA ATTGTACCCATTTGGAAGAAGGATGGCGAAAAAGAAGCAGTTTTAAATGCAGCAGCATCTCTAAAGGAGGTCCTTCACAG CTCTGGAATCAGAGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGGTGGAAATTCAATTTCTGGGAAATGAAGGTTT GATGTTAAACTTGGAAGGGAATTTGTTTTCAGGGACCAAATCATGTGCATTGCTTCTGCTCATTCTGCAGGATTTTTCCA TGTTTCAGTATCTGATAACTTCATTTAAATCGTCATATTTCAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATG TGTCAAGCGGAAGTGTGGTGATATCCAGGAGAGATATCCCTGGGAAGCAGGGGAAAGTGTTTGGAATTTCTATGGAGCCT TCGATTTTGGAGGCTTATGTAAAAGACAAGTTGGATGAGATACAGTCTTCTCTTTTGGAAAGAGCAATTGCATTTCGAGA TAGGTTCATTCCTTCTCTGCTACTTTTGGCTTGTGATAGATATTTGAACCTTATACAAATCTAACTGTTGGTTCTGGAAT CTGGACTTAATTAATTTTAGCAATAATATAAGTCCTGACTGATATTTTCCTGGATAATATATTTTAGGGTTTGGCCCAGT TAAATAGTTGACAGAAAAATTCTGCTAACCGGTGCATACTGTACTGACCAAGCCCAGTCCACTATATGAAAAAATTAAAA TACACTAGAATGTCAATCAGTTGAAAAAATTAAGTTCATGCTTTATTGGTGAAAAAAATCATTCCAATTTTTCTTCTAGA CAGGCAATCAGTTGGAATCAGGGTTTCCTGTGTTATTAGTTAAGAAAGTAAGAACACATGATTTCAATAAATTATATTAT AGATTCACTGACCAGAGCAATCAAATCCAGCAGCTTCTCGCTATAGGAAATTTGATGAAATTTCATTTTTATTTCACTCT CTCAAGTTGTGCATATTCCATGTCCACAGGCAGACTGATATTTACACTTTATTTTTTCAGCAACATTGTAGATGTGAGCA CATACGATGATCTTAAAGCTGCAATATCACAAGGCAAATGGGCAAGGGGACCTTGGTCTGCAAGGTTGTATTTTCCCCCC TATTTCTTCTATAAATTTGTTTTGATGGTGAAAACATAAGCATGTGTATATGATGACCATGATTCACAGCACTAATCTCA AGCTTTACTCGATGTCACAGTGATGAAGACGAGTTAAAAGTAAAAGAGGAAACTGGAGCAACTATCAGGTGTTATCCTTT TGAACAGCCACAGGGGATTAAAAGATGCTTGATGACTGGAGATCCAGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACT AA
CDS sequence (LotjaGi2g1v0122700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGACATTTATACGAAATTTGCATATGAGCAAACTGCAATACCTGTTATTCCAGGTCGCAAATCTAAAGTGGAAAC ATTTGCTGGTGCTTGTAAGACCTATACTATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCAGGAACCAGCCACA ACCTTGGGCAAAACTTTGCCCGTGCGTTTGGAACACTGTTCACAGATGAAAATGGACAAAGGGAATACGTTTGGCAGACA TCATGGGCGATAAGCACCCGTTTTGTTGGAGGTATCATCATGACACATGGGGATGATATAGGCCTAATGCTCCCCCCCAA GATTGCACCGATACAGGTGGTAATTGTACCCATTTGGAAGAAGGATGGCGAAAAAGAAGCAGTTTTAAATGCAGCAGCAT CTCTAAAGGAGGTCCTTCACAGCTCTGGAATCAGAGTTAAACTTGATGACTCAGATCAAAGAACCCCTGGGTGGAAATTC AATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGTCAAGCGGAAGTGTGGTGATATC CAGGAGAGATATCCCTGGGAAGCAGGGGAAAGTGTTTGGAATTTCTATGGAGCCTTCGATTTTGGAGGCTTATGTAAAAG ACAAGTTGGATGAGATACAGTCTTCTCTTTTGGAAAGAGCAATTGCATTTCGAGATAGCAACATTGTAGATGTGAGCACA TACGATGATCTTAAAGCTGCAATATCACAAGGCAAATGGGCAAGGGGACCTTGGTCTGCAAGTGATGAAGACGAGTTAAA AGTAAAAGAGGAAACTGGAGCAACTATCAGGTGTTATCCTTTTGAACAGCCACAGGGGATTAAAAGATGCTTGATGACTG GAGATCCAGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACTAA
Protein sequence (LotjaGi2g1v0122700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIDIYTKFAYEQTAIPVIPGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTLFTDENGQREYVWQT SWAISTRFVGGIIMTHGDDIGLMLPPKIAPIQVVIVPIWKKDGEKEAVLNAAASLKEVLHSSGIRVKLDDSDQRTPGWKF NFWEMKGVPLRIEIGPRDVSSGSVVISRRDIPGKQGKVFGISMEPSILEAYVKDKLDEIQSSLLERAIAFRDSNIVDVST YDDLKAAISQGKWARGPWSASDEDELKVKEETGATIRCYPFEQPQGIKRCLMTGDPAEEVAIFAKSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 99 | 99 | 1.16E-21 | – | |
| PANTHER | 1 | 307 | 307 | 9.3E-161 | – | |
| Gene3D | 1 | 105 | 105 | 9.2E-29 | – | |
| PANTHER | 1 | 307 | 307 | 9.3E-161 | – | |
| SUPERFAMILY | 101 | 233 | 133 | 4.42E-30 | – | |
| CDD | 101 | 307 | 207 | 8.11211E-92 | – | |
| Gene3D | 106 | 229 | 124 | 1.8E-36 | ||
| Pfam | 112 | 192 | 81 | 1.7E-17 | ||
| SUPERFAMILY | 235 | 307 | 73 | 4.32E-18 | ||
| Gene3D | 236 | 307 | 72 | 1.7E-20 | ||
| SMART | 241 | 307 | 67 | 4.8E-27 | ||
| Pfam | 241 | 307 | 67 | 7.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of LotjaGi2g1v0122700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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