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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0754600 |
| Transcript ID | LotjaGi1g1v0754600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132761414..132767262) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTATTAATTTTATTCTACTATTTAAAAGGAATAATAAAAGGCAAAAATTTACCCTAATCTTACATTAATGTTGAGAG TGTGTAAGAGTGAAGGAGTGAGTATAAGACAAAAAAGAACGAAAACGACGAGCAATTTTATTATCTGAATTGAAAACGAA AACCCTAGTCTCTCGCAGCGCCACAATCGCTCTCGCGCGTTCCACTCACCTTCGCCGGCTTCTCTGCAACCGGTAACACA CCCTCCGTTTCAATCCAATACCTTCTTCTTCTTCTTCTTCTTCTTCACCACTGAATCTGTATCGTTTCTCTTTTTTCGCT GTTGCAGGATCTCGTGTTCATCGTTCACAATGGCGGGGACTGAAGCCAAAACCAAGAAATCTGATTCGAAACCCCAAAAG CAGCAGCAGCAACAAGGTAATTCGCAATTCGCATTGCTCTGATGTTCGTTCCTGCATGGTTGTAGCGTTTCACGGTTTAA CGACGACGATGCTTTGCAGGTGGTGGGAAGAAGAAGGAGGTGAAGAAAGAGACTGGGTTAGGGCTTACGCATAAGAAGGC TGAAAACTTCGGAGAATGGTATTCCGAGGTATTTGACCTGATCTGTGTTTGGTCAACATTGCTAATTTCGATCTGATAGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTTTGACTTTGGCTTTCGATTGATGAATCAGGTTGTTGTTAATTCGGAA ATGATTGAGTATTATGATATTTCTGGTTGCTATATTCTGAGGCCTTGGTCCATGGCCATATGGGAGATAATGCAAGTAAG TTTGTTTACAAGGATATAGTTAATTGCTTTAATTTGCTAAGCTTTCTGTAGCTCGGAATTGCTTTAACTTGTAATGCAAT GTGCAGGCTTTTTTTGATCCAGAAATTAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGT TTTGCAAAAGGAGAAGGACCATGTTGAGGGATTTGCTCCAGAGGTCAGAGTTTGTGGTTTTGTTGCGCCATGTTATTTAG AATATTATCATTGAATGATTATTCATGGAATTTGGTTTGCTAGTAAAGTTTTGGAGATCATTGCATGCCTACATGATTTA TTTTCCTTGGACCAAGTTTTCTTAGTGTCTGTTTGATCTGGAGTGGGGAAAGTCCAAAATCATGGATTAAGCGAAAGCCT GTGTCTAGTAGCTTTTGTTTGAGCAATGAGTTTTTAATTCTCAATGCAAAGCCAAACATACTATTAACCAGGGACATACT GTGCTGGATAACGGGATATACCAACAAAAAAATATTTGAATCGGTATTTTTAATGATTGCTGGATAATAATCTATACAGC AGCATTGTTTTCTTGAATGACATTTGATTTTCAAAATATTAATATTTTTTGGATTATGTCTTGCTCATTTTCCAGGTTGC TTGGGTGACTAAGTCTGGGGAATCTGAGTTAGAAATTCCTATTGCTATTCGCCCAACTAGTGAAACCGTTATGTACCCCT ACTACTCCAAGTGGATTAGGGGGCATCGTGACTTGCCACTGAAACTCAATCAGTGGTGCAATGTTGTTAGATGGGAGTTC AGCAACCCCACACCATTCATCAGGTACTGAGTAATCTTTCCCCCTTTTTTTCACCTTTTTTTGTTTCTCCATTTTGTATG CCTATTTGCTGGCCACATTTGATGTAATGAACACTTCCAAACTTAATTAAAAGACTTCAATTTTGGGGTTTTCAGCTTTG TTTATGTTTTCCACAATGCCTTGAAATTTTACTTGTTAGTTGTTACCTTTATGAATGGATGTTCATCTGATAGTGATTCT GATGAATTGGTTACAGTGAAGCAGGCTTACAAAATATGTTTTTTTAAGTTTATTTTCAATCTTAAATTTGAAAGGAATAA TTATTGTTAAATATGATGTCAGATATTTTTTCTATAATTCTGTCACTTTTGATTTACATTGTAGAACTTGTTTATAGTCC ATCTTGTGCTGCTCATACAATTTTCGATTGCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGACACACTGCTTTTGCAACCA AGGAGGAAGCAGATGCAGAGGTATTTTACTAAATGGTTATTTTTAGGAATCTCTCCTTTGTTTTATTTTCATAACCTGCC TTAATTTTGTCATTTTTTGTCTTTGAATGTCTAGTGAGAGTTGTTAAGCACTTATCTCATATTGTGCTTTATGAAGCATT CTGTTTTTTTTTAAACGACTTTTATTATATTTCTCTACCTTCCCTTTCTTGTTGTTTTATAGTACTTAAATTAGCTATGA ACTTCCATTTGGCTCCTGGTGCATACTGCATACTGCATACTATTTTCTTATACTCATGAATTCATATTTTCCACGAAAGA ATGCAGAAATCCAATCTTTTGAAAATTTGTTTGAAAATATTCTAAACTATTGTTGTTGCAGGTTCTTGAGATATTAGAAT TATATAGGCGTATATATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGCGCTTGAGAAGTTTGCTGGT GGACTTTACACTACCAGTGTTGAGGTACATGTTTGACATTCTTCTCAAATACTGATGTACTGTTTGAATGTTGAAAAGTT GTTTACAAAATTTTGATGTTGAATTTTGCTAGGCATTTATTCCAAACACAGGTCGTGGTGTACAAGGAGCAACTTCTCAT TGTCTGGGCCAAAATTTTGCTGAAATGTTTGAGATTAACTTTGAAAATGAGAAGGGAGAAAAAGCAATGGCCTGGCAAAA CTCATGGGCCTATAGTACTCGAACGGTAAGCCTTGATTTCTTGATTAGACATGCATTGGAGGATTACTCTATATTAATTG CATCTACATTCCTGGCTGTTATTTTATCAGATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTAGTGCTTCC TCCTAAAGTAGCATCAGTTCAAGTCATAGTGATTCCCGTGCCTTTCAAAGATGCTAATACTCAAGGAATCTATGATGCTT GTGCTGCAACTGTGAATACATTATGTGAAGCAGGTATTCGTGCTGAGTCAGATACTAGAGATAACTATTCTCCCGGATGG AAGTATTCTCACTGGGAAATGAAAGGCGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTTAT CAACTTTCTCCTACCGTTCTCCTGATTTTCATAAATGACATTTTGCTTTTACACTGTCAGTTTTCTAACAAAATACCAGA TAAATTTGTTCATATTTTTCACAGGTTCGTGCTGTTCGTCGTGATAATGGAGCAAAGATAGACATTGCTAATGCAGATTT GGTTGAGGAATTAAAGAAGTTGCTGGATAATATTCAGCAGAATCTTTTTGATGTTGCCAAACAAAAACGAGATGAATGTA TTCAGATCATACATACATGGGATGAGTTTATACAAGCTTTGAATGAAAAAAAGATGATCTTAGCACCTTGGTGTGATGAG GAGGTATGGATCGTATAGTTTCGTCCGAATATGATGATTCCGGCATTTTGATAATATGCTTGACAAGTTTGATTTTTAAG GCATTGCCTTGTTTTATTGCCTAGTCTCAGCTTTTATTTATACTTGTTTGGCTATCTGATTGTGGTCAATTATGATTTAT TTAGCTTAGGTACATTTTTATGTGACAGATATACAAAAAAAACTATCAAAACTGTCCTTGAAAGCTTCATTATCAGTTTA AAAAATAATGAAGCATATTTCTCCTTTTTTTATAACTAATGATGCATATGATTGGGCAACCCTTATGAGCTTCCGTTTTA TAATTTCCTTTCATCATGCACTTCATTTGCTAAAGAATGTCATACATACCAAATAAAACTGAAGATGAAGTTATCGTTCA TGTCATCTTTCTTTGAAAAAAGTGTTGATATTTTGGAAACCTGATTTTGCAATGTATGTTACTCATTAGACATTACATAA CCGTCTTAATGTCTTATGCATAATGTTCAAACATGTCTGGCCATGTATGGTGTGTGGTTTAGTGTCTTGATCGTAACAGT TTTCGGTCAATCATAATGCTTCAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAGGGGCGAGACGGGAGCAGCTAAGAC CCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGTATTTCAAATGCGTGGCGGTGTTATTTTGTGACGGTTAAAA CCTTTTTGCAGCTTTAACTTCTATATGGGCTTGCCATGAACTATTGTTTTATATTTCTTATTTTTATCGGTTAATCCCGT TAACTATTTTGGTGCAATTCTCTGATATAGATATAGGAACGATTGTAGCTCTGTCAATATGCATTATGCAATATAGAGTT CTATTCTTCATCCCTTTTCTGTCAGTAAATCTCAATAGTCAATTCATAAATAGAAGACTTTTCTGCCTCTAATGAATAAT TGTCAGTATATCACAGTTAATGTTGATGTTGCTTATTGAAATCTTATGTGGTTTGGTTTACAGGCACCAAATGCTTTGCA TCAGGAAAGCCTGCGACAAAGTGGTCATACTGGGGCAGAAGTTACTAGATCTTGGTTGTGGTATTTTCTGGAGCTAGTTT GATATTTAACCTTGTCTGATTTGTGGGTTACATAAATATTAGCTTTCTTTTGCTTGAGTACATTTTTGTTTTACTTTGAT TTTATACGTTACAATAGAATTCAGGTTTGAAGATGAATATTACATCTGTTGCCATCTAATTATCGTTGGGAGCATATTGG TTCAATACTTGCATTGAGAACAGTGGTTGCGTATGAACATTGAATTTATTCATTTTGATGTGTTGCGAACTTGCTCCTTA GCTACAAACGAACCGGAAATCTTGTTTAACCAATGGGAAAAATAAAAAAGAATCCCACGCATTTGGCATGTCCGGAGTGT ATCAGGGGTTGATTAGTTTAGTAGCCAATTAGACTGATAAAGCATGAAATGAGATTGAGCACCTAACTTAATCATCAATT ATGCAAAGCACTGCTAAAGTGATGCTACAGAAAGCATGTGTGCAGTATCATTTTTCTTTGTATGTACATAACCTCACCTT ATGGTAAGAAGTTCATATAAAGAAAGGATGAAATACACAATTATGTGACTGGGTCTACACAAAATTGCACAATTAAAATG CTTTAAAAAATTCATTGATGTAGTCATCTTGCCGTAGAAATATTACATGTGGCTACGAAGGGAATAGCCATTAAAAATGT AATATATGATTATATGGTGCATAACCTTAGTGCATGTTTGCCTTCTATTTTGAAGGGACAATTAATATAGGGCAAAAGTT TGTGTTTCAAAATGGATTTTGATGAAGTAGAAGTTTATGTAAGCAACTAAGCATATTATAGCTCACGATTTCATTATAAA TGCGATATTGTTTGATATCCTTTTACTAAAAATCCTACCAAACATCTTTCTATTGCTCTATAGCAATATTATTAACCGAA AAAATAGATGCATTTGCTAATTAAAAACATTGATACTTTCTGCTGCAAGATTTCGAATTGTCCATGTGCTATTACTATCA TATAGCAGTGTTAGAGTTACAGTTTGGTTTATCATCAAGCATAGGATGCTTGACCTTGGAAACCTTAACTTTTCACGCGC CAGAGGTTGAGATGTATGACTTAACATTTTGTTTCATTAACATTGTCTGTTCTAGGAACTGTTCCCTCTTTCTAGACACA TTTTTTTCTTAATAAAATAATCAAAATTGATGTTTAGTTAGTTCATTTTTTTTGTGTGCCAACGATCGTCAGTTCAAGAA GCACTTCAC
CDS sequence (LotjaGi1g1v0754600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGGACTGAAGCCAAAACCAAGAAATCTGATTCGAAACCCCAAAAGCAGCAGCAGCAACAAGGTGGTGGGAAGAA GAAGGAGGTGAAGAAAGAGACTGGGTTAGGGCTTACGCATAAGAAGGCTGAAAACTTCGGAGAATGGTATTCCGAGGTTG TTGTTAATTCGGAAATGATTGAGTATTATGATATTTCTGGTTGCTATATTCTGAGGCCTTGGTCCATGGCCATATGGGAG ATAATGCAAGCTTTTTTTGATCCAGAAATTAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGG AGTTTTGCAAAAGGAGAAGGACCATGTTGAGGGATTTGCTCCAGAGGTTGCTTGGGTGACTAAGTCTGGGGAATCTGAGT TAGAAATTCCTATTGCTATTCGCCCAACTAGTGAAACCGTTATGTACCCCTACTACTCCAAGTGGATTAGGGGGCATCGT GACTTGCCACTGAAACTCAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCCACACCATTCATCAGGAGTCG TGAGTTTCTTTGGCAGGAAGGACACACTGCTTTTGCAACCAAGGAGGAAGCAGATGCAGAGGTTCTTGAGATATTAGAAT TATATAGGCGTATATATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGCGCTTGAGAAGTTTGCTGGT GGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACAGGTCGTGGTGTACAAGGAGCAACTTCTCATTGTCTGGG CCAAAATTTTGCTGAAATGTTTGAGATTAACTTTGAAAATGAGAAGGGAGAAAAAGCAATGGCCTGGCAAAACTCATGGG CCTATAGTACTCGAACGATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTAGTGCTTCCTCCTAAAGTAGCA TCAGTTCAAGTCATAGTGATTCCCGTGCCTTTCAAAGATGCTAATACTCAAGGAATCTATGATGCTTGTGCTGCAACTGT GAATACATTATGTGAAGCAGGTATTCGTGCTGAGTCAGATACTAGAGATAACTATTCTCCCGGATGGAAGTATTCTCACT GGGAAATGAAAGGCGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTTCGTGCTGTTCGTCGT GATAATGGAGCAAAGATAGACATTGCTAATGCAGATTTGGTTGAGGAATTAAAGAAGTTGCTGGATAATATTCAGCAGAA TCTTTTTGATGTTGCCAAACAAAAACGAGATGAATGTATTCAGATCATACATACATGGGATGAGTTTATACAAGCTTTGA ATGAAAAAAAGATGATCTTAGCACCTTGGTGTGATGAGGAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAGGGGCGAG ACGGGAGCAGCTAAGACCCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAATGCTTTGCATCAGGAAA GCCTGCGACAAAGTGGTCATACTGGGGCAGAAGTTACTAG
Protein sequence (LotjaGi1g1v0754600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTEAKTKKSDSKPQKQQQQQGGGKKKEVKKETGLGLTHKKAENFGEWYSEVVVNSEMIEYYDISGCYILRPWSMAIWE IMQAFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHR DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSALEKFAG GLYTTSVEAFIPNTGRGVQGATSHCLGQNFAEMFEINFENEKGEKAMAWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVA SVQVIVIPVPFKDANTQGIYDACAATVNTLCEAGIRAESDTRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRR DNGAKIDIANADLVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNEKKMILAPWCDEEEVEADVKARTRGE TGAAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 20 | 519 | 500 | 0.0 | – | |
| PANTHER | 20 | 519 | 500 | 0.0 | – | |
| Gene3D | 38 | 316 | 279 | 2.1E-113 | – | |
| Hamap | 39 | 519 | 481 | 37.69 | ||
| TIGRFAM | 40 | 519 | 480 | 6.5E-176 | ||
| SUPERFAMILY | 44 | 310 | 267 | 2.01E-74 | – | |
| CDD | 45 | 306 | 262 | 7.49425E-163 | ||
| ProSiteProfiles | 78 | 316 | 239 | 19.494 | ||
| PRINTS | 97 | 115 | 19 | 4.1E-9 | ||
| Pfam | 138 | 304 | 167 | 4.2E-17 | ||
| PRINTS | 138 | 149 | 12 | 4.1E-9 | ||
| PRINTS | 168 | 176 | 9 | 4.1E-9 | ||
| PRINTS | 178 | 189 | 12 | 4.1E-9 | ||
| SUPERFAMILY | 311 | 438 | 128 | 2.62E-32 | – | |
| CDD | 312 | 519 | 208 | 1.33349E-90 | – | |
| Gene3D | 317 | 437 | 121 | 5.2E-40 | ||
| Pfam | 323 | 419 | 97 | 6.8E-19 | ||
| Coils | 414 | 434 | 21 | - | – | |
| Gene3D | 440 | 519 | 80 | 4.8E-27 | ||
| SUPERFAMILY | 442 | 519 | 78 | 3.34E-18 | ||
| SMART | 446 | 519 | 74 | 6.1E-31 | ||
| Pfam | 446 | 519 | 74 | 6.0E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of LotjaGi1g1v0754600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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