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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1468010 |
| Transcript ID | Lj2g3v1468010.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi|356572846|ref|XP_003554576.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | – | – | |
| Gene3D | 20 | 300 | 281 | 1.40E-106 | – | |
| PANTHER | 22 | 475 | 454 | 6.90E-252 | – | |
| PANTHER | 22 | 475 | 454 | 6.90E-252 | – | |
| Hamap | 22 | 503 | 482 | 35.404 | ||
| TIGRFAM | 24 | 503 | 480 | 1.70E-161 | ||
| SUPERFAMILY | 27 | 294 | 268 | 1.58E-64 | – | |
| CDD | 28 | 290 | 263 | 1.78E-144 | ||
| ProSiteProfiles | 65 | 300 | 236 | 15.795 | ||
| Pfam | 117 | 288 | 172 | 2.20E-12 | ||
| SUPERFAMILY | 295 | 422 | 128 | 7.36E-29 | ||
| CDD | 296 | 503 | 208 | 1.39E-78 | – | |
| Gene3D | 301 | 421 | 121 | 2.70E-44 | ||
| Pfam | 307 | 403 | 97 | 1.30E-16 | ||
| Coils | 398 | 418 | 21 | – | – | |
| Gene3D | 426 | 502 | 77 | 2.90E-18 | ||
| SUPERFAMILY | 426 | 503 | 78 | 2.75E-18 | ||
| SMART | 430 | 503 | 74 | 1.40E-29 | ||
| Pfam | 430 | 503 | 74 | 7.10E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of Lj2g3v1468010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1468010.1, powered by CORGI.
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