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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0009800 |
| Transcript ID | LotjaGi6g1v0009800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M1R2|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1NBI4|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1842035..1847268) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGTTCTTCAGACATTCCTCTTCAAGTTCATCGTTCACAATGGCGGGGACTGAAGCCAAAGCCAAAACATCCGATTCC AAGCCTGCAAAGCAGCAACAAGGTAATTCGCAATTCGCACTGCTCTGATGTTTGTTCCTGCATGCATGGTTTTAGCAGCG ACGATGCTTTGCAGGTGGGGGGAAGAAGAAGGAGGTGAAGAAAGAGACTAGGTTAGGGCTCACGCATCGGAAAGCTGAAA ACTTTGGAGAGTGGTATTCTGATGTACTTCCTCCATTCCTATTTATCTGTCCTGGAAGAGAAGGTTCACACAAATTAAGG AAAGCAATTAAATGTGTTGATTTTCATAAAAATATTATTTGTTTTCTTATATCACCCTTTAGAATATGTATTTTATCTTT CTTCATTTACTGTTTATGTAAGGACATTTCTTGGAAAAACATCAATTAATATTCTCTTGAAACTCTAAGTGGACAATTAT ATAGGAACAAAAAAATTTCTTCAAAGTGGACAGTTAATAAGGAACGGAGGTTAATAAGGAACGGAGGGAGTATTTGTTTT GACCTGATCTGTGTTTGGTCAACATTGCTAATTTCGATCTGAGTGTGTTTTGTTTGAATTTGGGTTTTGATTGATCAATC AGGTTGTTGTTAATGCGGAAATGATTGAGTATTATGATATTTCTGGCTGCTATATTCTGAGGCCTTGGTCAATGGCCATA TGGGAGATAATGCAAGTAAGTTTGTTTACATGGATATAGTTCTCCAGTGTGGAATGCCTTTAATTTGTGATACAATGTGC AGGCTTTTTTCGATCCAGAAATTAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTCTG CAAAAGGAGAAGGACCATGTTAAGGGATTTGCTCCAGAGGTCACAGTTTGTGGTTTTGTTGCGCCATGTTATTTAGAATA TTATCATTGAATGATTATTCATGGAGTTTCGTTTGCTAGTAAAGTTTTGGAGATCATTGCATGCCTACGTGATTTATTTT CCTTGGACCAAGTTTTCTTAGTGTCTGTTTGGTCCAAAACCATGGTTTAAGCGAAAGCTTGTGTCTAGTAGCTTTTGTTC GAGCAATGAGTTTTTAATTCTCAATGCAAAACCAAACATACTATTAACCAGGGACATACTGTGCTGGATAACGGGATATA CCAACAAAAAAATATTTGAATTGGTATTTTTAATGATTGCTGTATAATAATCTATACAGCAGCATTGTTTTCTTGAATGA CATTTGATTTTCAAAATATTAATATTTTTTGGATTATGTCTTGCTCATTTTCCAGGTTGCTTGGGTGACTAAGTCTGGGG AATCTGAGTTAGAAATTCCTATTGCTATTCGCCCAACTAGTGAAACCGTTATGTACCCCTACTACTCCAAGTGGATTAGG GGGCATCGTGACTTGCCACTGAAACTCAATCAGTGGTGCAATATTGTTAGATGGGAGTTCAGCAACCCCACACCATTCAT CAGGTACTGAGTAATCTTTCCCCCCCTTTTTTCACCTTGTTTTGTTTCTCCATTCTGTATGCCTATTTGTTGGCCACATT TGATGTAATGAACACTTCCAAACTTAATTAAAAGACTTCAATTTTGGGGTTTTCAGCTTTGTTTATGTTTTCCACAACGC CTTGAAACTTTACTTGTTAGTTGTTACCTTTATGAATGGATGTTCATCTGATAGTGATTCTGATGAATTGGTTACAGTGA AGCAGGCTTACAAAATATGTTTTTTTAAGTTTGTTTTCAATCTTAAATTTGCAAGGAATAATTTTTGTTATATGTTAATT ATCTTATTGTTAAATATGATGTCAGATATTTTTTCTATAACTCTGTCACTTTTGATTTACATTGTAGAACTTGTTTATAG TCCATCTTGTGGTGCTCATACAAATTTCGATTGCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGACACACTGCTTTTGCAA CCAAGGAGGAAGCAGATGCAGAGGTATTTTATTAAATGATTATTTTTAGGAATCTCTCCTTTGTTTTATTTTTATAACCT GCCTTAATTTTGTCATTTTTTGTCTTTGCATGTCTAGTGAGAGTTGGTAAGCACTTATCTCATATTGTGCTTTATGAAGC ATTCTGTTTTTTCAAAACGACTTTTATTATATTTCTCTACCTTCCCTTTCTTGTGGTTTTATAGTACTTAAATTAGCTAT GAACTTCCATTTGGCTCCTGGTGCAGTGGTGCATACTGCATACTATTTTCTTATACTCATGAATTCATATTTTCCACGAA AGAATGCAGAAATCCCATCTTCTGAAAATTTGTTTGAAAATATTCTAAACTATTGTTGTTGCAGGTTCTTGAGATTTTAG AATTATATAGGCGTATTTATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCT GGTGGACTTTACACTACCAGTGTTGAGGTACATGTTTTACATTCTTCTCAAATACTGATGTATTGTTTGAATTTTGAAAA GTTGTTTACAAAATATTGATGTTGATTTTTGCTAGGCATTTATTCCAAACACAGGTCGTGGTGTACAAGGAGCAACTTCT CATTTTCTGGGCCAAAATTTTGCTAAAATGTTTGAGATTAACTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCA AAACTCATGGGCCTATAGTACTCGAACGGTAAGCCTTGATTTCTTGATTAGACATGCATTGGAGGATTACTCTATATTAA TTGCATCTACATTCCTGGCTGTTATTTTATCAGATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTAGTGCT ACCTCCTAAAGTAGCGTCACTTCAAGTCATAGTGATTCCTGTGCCTTTCAAAGATGCTAATACTCAAGGAATCTATGATG CCTGTGCTGCAACTGTGAATACATTATGTGAAGCAGGTATTCGTGCTGAGTCAGATACTAGAGATAACTATTCTCCTGGG TGGAAGTATTCTCACTGGGAAATGAAAGGCGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGT TATCAACTTTCGCCTACCGTTCTACTGATTTTCATATCTGACATTTTGCTTTTACACTGTCAGTTTTCTAACAAAATACC AGATAAATTTGTTCATATTTTTCACAGGTTCGTGCTGTTCGTCGTGATAATGGAGCAAAGATAGACATTGCTAATGCAGA TTTGGTTGAGGAATTGAAGAAGTTGCTGGATAATATTCAGCAGAATCTTTTTGATGTTGCCAAACAAAAACGAGATGAAT GTATTCAGATCATACATACATGGGATGAGTTTATACAAGCTTTGAATGAAAGAAAGATGATCTTTGCACCTTGGTGTGAT GAGAAGGTATGGATCGTATAGTTTCGTCCGAATATAAGGATTCCAGCATTTTGATAATATGCTTGACAAGTTTGATTTTT AAGGCATTGCCTTGTTTGATTGCATAGTCTCAGCTTTTATTTCTACTTGTTTGGCTATCTGATTGTGGTCAATTATGATT TATTTAGCTAAGGTACATTTTTATGTGACAGATATACAAAAAAAAAAATATCAAAACTGTCCTTGAAAGCTTCATTATCA GTTTTAAAAATAATGAAGCATATTTTCTCCTTTTTTTATAACTAATGATGCATATGATTGGGCAACCCTAATGAGCTTCC GATTTATAATTTCCATTCATCATGCACTTCATTTGCTAAAGAATGTCATACATACCAAATAAAACTGAAGATGCAGTTAT CGTTCATGTCATCTTTCTTTGAAAAAAGTGTTGATATTGTTGAGGAAAGAAAGACACGACTTGATTTAGACAGTACGATA GAGCGAGAAAGCAGAATAAATCACACAGAAAACTTTGGTCACGCAGTTCAGCCAATTGTGTCTACCTCTGCGGTTATAAA GTAGCTATAGCTCCCTTTATTGATTCTTAATAATCAATTGTGTTTACAATAGCAATTTCTCTCAACTGCCTAATTGTCTC ACACCTCTGCAATAGCAGTTTCTCTCAAGCCCAATTGTTGTGTACCCTCGCACACCGCTGAATTGCGGCGCACTTGTACA CCGCCCAATTGCGGCGCACTCCGCACACACTTGGTACACACTAGCACATGACACACTTTTATTGTTAGATGTCTTATCTA TTTATAGGACACTACTAATTCTAGTATTACAAGATAAGATAATCTAAACATCTTATCTAAACTCATTAGATAAGATAGAG TCTTATCTTAACCCATAAGATAAGATAGAGTCTTATCTAAACCCATAAGATAGAATTCCTCTAACCCAATATCACAATCC CCTTAAATCAAATTCAAATAACTGATAAGATAATGAGCCAATCCCAACAGATATTTTGGAAACCTGATTTTGCAATGTAT GTTACTCATTAGACATTACATAACCGTCTTATGCATAATGTTCAAACATGTCTGGCCATGTATGGTGTGTGGTTTAGTGT CTTGATTGTAACAGTTTTCGGTCAATCATAATGCTTCAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAAAGGCGAGAC AGGAGCAGCTAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGTATAATCCTTCTTGTTCAAATGTGTG GCGGTGTTATTATGTGACGGTTAAAACCTTTTTGCAGCTTTAACTTCTATATGGGCTTGCCATGAACTATTGTTTTATAT TTCTTATTTTATTGGTTAATCCCGTTAACTATTTTGGTGCAATTCTCTGATATAGATATAGGAACGATTGTAGCTCTGTC AATATGCATTATGCAATATATAGAGTTCTATTCTTCATCCCTTTTCTGTCAGTAAATCTCAATAGTCAATTCATAAATAG AAGACTTTTCTGCCCCTAATGAATAATTGTCAGTATATCACAGTTAATGTTGATGTTGCTTATTGAAATCTTATGTGGTT TGGTTTACAGGCACCAAATGCTTTGCTTCAGGAAAGCCTGCGACAAAGTGGTCATACTGGGGCAGAAGTTACTAGATCTT GGTTGTGGTATTTTCTGGAGCTAGTTTGACATTTAACCTTGTCTCATTTGTGGGTTACATAAATATTAGCTTTCTTTTGC TTGAGTACATTTTTGTTTTACTTTGATTTTATAC
CDS sequence (LotjaGi6g1v0009800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGGACTGAAGCCAAAGCCAAAACATCCGATTCCAAGCCTGCAAAGCAGCAACAAGGTGGGGGGAAGAAGAAGGA GGTGAAGAAAGAGACTAGGTTAGGGCTCACGCATCGGAAAGCTGAAAACTTTGGAGAGTGGTATTCTGATGTTGTTGTTA ATGCGGAAATGATTGAGTATTATGATATTTCTGGCTGCTATATTCTGAGGCCTTGGTCAATGGCCATATGGGAGATAATG CAAGCTTTTTTCGATCCAGAAATTAAGAAAATGAAGATCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGAGTTCT GCAAAAGGAGAAGGACCATGTTAAGGGATTTGCTCCAGAGGTTGCTTGGGTGACTAAGTCTGGGGAATCTGAGTTAGAAA TTCCTATTGCTATTCGCCCAACTAGTGAAACCGTTATGTACCCCTACTACTCCAAGTGGATTAGGGGGCATCGTGACTTG CCACTGAAACTCAATCAGTGGTGCAATATTGTTAGATGGGAGTTCAGCAACCCCACACCATTCATCAGGAGTCGTGAGTT TCTTTGGCAGGAAGGACACACTGCTTTTGCAACCAAGGAGGAAGCAGATGCAGAGGTTCTTGAGATTTTAGAATTATATA GGCGTATTTATGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTT TACACTACCAGTGTTGAGGCATTTATTCCAAACACAGGTCGTGGTGTACAAGGAGCAACTTCTCATTTTCTGGGCCAAAA TTTTGCTAAAATGTTTGAGATTAACTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAAAACTCATGGGCCTATA GTACTCGAACGATTGGGGTGATGGTTATGGTTCATGGTGATGACAAGGGATTAGTGCTACCTCCTAAAGTAGCGTCACTT CAAGTCATAGTGATTCCTGTGCCTTTCAAAGATGCTAATACTCAAGGAATCTATGATGCCTGTGCTGCAACTGTGAATAC ATTATGTGAAGCAGGTATTCGTGCTGAGTCAGATACTAGAGATAACTATTCTCCTGGGTGGAAGTATTCTCACTGGGAAA TGAAAGGCGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTGGCAAATAAGCAGGTTCGTGCTGTTCGTCGTGATAAT GGAGCAAAGATAGACATTGCTAATGCAGATTTGGTTGAGGAATTGAAGAAGTTGCTGGATAATATTCAGCAGAATCTTTT TGATGTTGCCAAACAAAAACGAGATGAATGTATTCAGATCATACATACATGGGATGAGTTTATACAAGCTTTGAATGAAA GAAAGATGATCTTTGCACCTTGGTGTGATGAGAAGGAGGTGGAAGCAGATGTCAAAGCAAGGACAAAAGGCGAGACAGGA GCAGCTAAGACTCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAATGCTTTGCTTCAGGAAAGCCTGC GACAAAGTGGTCATACTGGGGCAGAAGTTACTAG
Protein sequence (LotjaGi6g1v0009800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTEAKAKTSDSKPAKQQQGGGKKKEVKKETRLGLTHRKAENFGEWYSDVVVNAEMIEYYDISGCYILRPWSMAIWEIM QAFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVKGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDL PLKLNQWCNIVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGL YTTSVEAFIPNTGRGVQGATSHFLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASL QVIVIPVPFKDANTQGIYDACAATVNTLCEAGIRAESDTRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDN GAKIDIANADLVEELKKLLDNIQQNLFDVAKQKRDECIQIIHTWDEFIQALNERKMIFAPWCDEKEVEADVKARTKGETG AAKTLCSPFDQPELPEGTKCFASGKPATKWSYWGRSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 17 | 517 | 501 | 0.0 | – | |
| PANTHER | 17 | 517 | 501 | 0.0 | – | |
| Gene3D | 37 | 314 | 278 | 3.0E-113 | – | |
| Hamap | 37 | 517 | 481 | 37.963 | ||
| TIGRFAM | 39 | 517 | 479 | 4.3E-176 | ||
| SUPERFAMILY | 42 | 308 | 267 | 3.23E-74 | – | |
| CDD | 43 | 304 | 262 | 2.10021E-164 | ||
| ProSiteProfiles | 76 | 314 | 239 | 19.389 | ||
| PRINTS | 95 | 113 | 19 | 6.4E-9 | ||
| Pfam | 136 | 302 | 167 | 8.8E-18 | ||
| PRINTS | 136 | 147 | 12 | 6.4E-9 | ||
| PRINTS | 166 | 174 | 9 | 6.4E-9 | ||
| PRINTS | 176 | 187 | 12 | 6.4E-9 | ||
| SUPERFAMILY | 309 | 436 | 128 | 6.87E-32 | – | |
| CDD | 310 | 517 | 208 | 6.98338E-89 | – | |
| Gene3D | 315 | 435 | 121 | 1.3E-39 | ||
| Pfam | 321 | 417 | 97 | 6.8E-19 | ||
| Coils | 412 | 432 | 21 | - | – | |
| Gene3D | 438 | 517 | 80 | 3.2E-26 | ||
| SUPERFAMILY | 440 | 517 | 78 | 7.06E-18 | ||
| Pfam | 444 | 517 | 74 | 1.2E-25 | ||
| SMART | 444 | 517 | 74 | 4.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of LotjaGi6g1v0009800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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