Domain Predictions — View

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SM00946

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000166 View details of GO:0000166 AmiGO InterPro QuickGO	Molecular function	Nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.	Subterm of GO:0036094 GO:1901265
GO:0004827 View details of GO:0004827 AmiGO InterPro QuickGO	Molecular function	Proline-tRNA ligase activity	Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro).	Subterm of GO:0004812
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of GO:0044424
GO:0006433 View details of GO:0006433 AmiGO InterPro QuickGO	Biological process	Prolyl-tRNA aminoacylation	The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA.	Subterm of GO:0006418

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4830240.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi\|356572846\|ref\|XP_003554576.1\|	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR11451 PTHR11451:SF21 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	28
Lj2g3v1468010.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max] gi\|356572846\|ref\|XP_003554576.1\|	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 MF_01571 PF00587 PF03129 PF09180 PS50862 PTHR11451 PTHR11451:SF21 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	26
LotjaGi1g1v0754600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi1g1v0754600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0754600	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi2g1v0122700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9FYR6\|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|V7C4B0\|V7C4B0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700	Domains G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 NON_CYTOPLASMIC_DOMAIN PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF3 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00946 SSF52954 SSF55681 SSF64586 SignalP-TM TIGR00408 cd00778 cd00862	33
LotjaGi2g1v0122700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9FYR6\|SYPM_ARATH Proline--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I1L332\|I1L332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122700	Domains G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR004154 IPR016061 IPR017449 IPR036621 PF03129 PF09180 PTHR43382 PTHR43382:SF3 SM00946 SSF52954 SSF55681 SSF64586 cd00862	16
LotjaGi2g1v0330900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0330900	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	27
LotjaGi6g1v0009800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29
LotjaGi6g1v0009800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Proline--tRNA ligase; TAIR: AT3G62120.3 Class II aaRS and biotin synthetases superfamily protein; Swiss-Prot: sp\|Q9M1R2\|SYPC_ARATH Proline--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr\|I1NBI4\|I1NBI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0009800	Domains Coil G3DSA:3.30.110.30 G3DSA:3.30.930.10 G3DSA:3.40.50.800 IPR002314 IPR002316 IPR004154 IPR004499 IPR006195 IPR016061 IPR017449 IPR033721 IPR036621 MF_01571 PF00587 PF03129 PF09180 PR01046 PS50862 PTHR43382 PTHR43382:SF6 SM00946 SSF52954 SSF55681 SSF64586 TIGR00408 cd00778 cd00862 mobidb-lite	29

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11