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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016897
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.109s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0079709.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 30805828 30806358 -
2 domain predictions
1 GO term
Lj0g3v0261809.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 135672175 135672669 +
2 domain predictions
1 GO term
Lj0g3v0349889.1
n.a. PREDICTED: SKP1-like protein 14-like [Cicer arietinum] gi|502088225|ref|XP_004488771.1| chr0 183814823 183815317 +
2 domain predictions
1 GO term
Lj1g3v2671420.4
n.a. SKP1 component [Medicago truncatula] gi|124359727|gb|ABD32817.2| chr1 31115190 31121766 -
2 domain predictions
1 GO term
Lj2g3v1267140.1
n.a. PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|225457883|ref|XP_002270061.1| chr2 20136202 20137297 -
2 domain predictions
1 GO term
Lj2g3v1670950.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr2 26005444 26007115 -
2 domain predictions
1 GO term
Lj4g3v2366280.1
n.a. n.a. chr4 32529144 32538953 -
2 domain predictions
1 GO term
Lj5g3v0186680.1
n.a. PREDICTED: SKP1-like protein 1A-like [Glycine max] gi|356496612|ref|XP_003517160.1| chr5 1631510 1632064 -
2 domain predictions
1 GO term
Lj5g3v2242520.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32479390 32479977 +
2 domain predictions
1 GO term
Lj5g3v2243530.1
n.a. PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|225428047|ref|XP_002279232.1| chr5 32484469 32485062 +
2 domain predictions
1 GO term
LotjaGi2g1v0297400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|T2DMS9|T2DMS9_PHAVU SKP1-like protein; Found in the gene: LotjaGi2g1v0297400 LjG1.1_chr2 77229502 77230768 -
2 domain predictions
1 GO term
LotjaGi2g1v0379100.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SWX0|I3SWX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 LjG1.1_chr2 87584290 87585617 -
2 domain predictions
1 GO term
LotjaGi3g1v0344100.1
n.a. SKP1; TAIR: AT1G20140.1 SKP1-like 4; Swiss-Prot: sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4; TrEMBL-Plants: tr|A0A1J7H518|A0A1J7H518_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0344100 LjG1.1_chr3 72146014 72146904 +
2 domain predictions
1 GO term
LotjaGi4g1v0131700.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|A0A1J7G3F5|A0A1J7G3F5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131700 LjG1.1_chr4 19272074 19274098 +
2 domain predictions
1 GO term
LotjaGi4g1v0232700_LC.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|F6GZT1|F6GZT1_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0232700_LC LjG1.1_chr4 54389436 54389900 +
2 domain predictions
1 GO term
LotjaGi5g1v0006400.1
n.a. SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SES0|I3SES0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0006400 LjG1.1_chr5 1500657 1501843 +
2 domain predictions
1 GO term
LotjaGi5g1v0348400.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348400 LjG1.1_chr5 66432017 66432769 +
2 domain predictions
1 GO term
LotjaGi5g1v0348500.1
n.a. SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348500 LjG1.1_chr5 66438085 66438942 +
2 domain predictions
1 GO term