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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0348500 |
| Transcript ID | LotjaGi5g1v0348500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1-like protein; TAIR: AT2G25700.1 SKP1-like 3; Swiss-Prot: sp|Q9SL93|ASK3_ARATH SKP1-like protein 3; TrEMBL-Plants: tr|A0A076JVB0|A0A076JVB0_9ROSA S-phase kinase-associated protein 1-like protein 3; Found in the gene: LotjaGi5g1v0348500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66438085..66438942) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTCATTCAAGTGTCCAACAATGGCTTCATCGTCTTCAACGAAAGTGATCTTGATGTGTTATGGAGGGGAGGTTAT GGAGGTGCATGAGGCTTTGGTGAATGCATCTCCAACTCTGAAGAGCTTGATACGAGAAAAGGGTGTTGATGGTGACAACA AGATCAACTTGCCAAACATCTCTATTGAAACTATGTGCAAGATCAATGAGTATGTGAAAAAGCATGCAGAGGCTGTTGAT CCTGCAAAAAATCTTGATGCCTGGGATGAAGAGTTTATTAAGGTTGGCTTAGACACTCTCTATGACCTACTCCAGGTTAG TTTCATCTCTTACACATTTTCTTGTATCATTATAAATTCCTTTTCCAATTAAAAATGATGTTTGATTTTATTCCTTCCTA TCTTGATTCTGTGTTGATTGGTTCATATGGTTTTCCAGGCATCATGTTACCTGAAAATTCAAAACCTTAATGATTTGGGA TGTAAGACTGTAGCCAACATAATAGCGGGAAAGACCCCAGAACAAATTCGCCAAACTTTCAATATCAAGAATGATTTTAC CCGAGAGGAAGAAGAGGAGGTGAAAGAAGAGTTCGCATGGGCCTTTGAAAAGAAATAAACAAGTCATGTTCAAATATCCA TATTTCTTCTATGAAAAGAAATATGGACAGTTATGATAGTTTTTTGGTGAATAAACCGGGTGGCTTAGCCACCCGAGAAG GTGTCAGTTTTAATTTGTTATTTTGTTTTCGATGAATAAAAGGGGTAAGGCACCTTGAAAATATGTCAGTTTTGGTTTGT TATTTTGTGATTGGTTATTATCTTATTCATGATATCTTACTAGAATGCATTAGACGCA
CDS sequence (LotjaGi5g1v0348500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCATCGTCTTCAACGAAAGTGATCTTGATGTGTTATGGAGGGGAGGTTATGGAGGTGCATGAGGCTTTGGTGAA TGCATCTCCAACTCTGAAGAGCTTGATACGAGAAAAGGGTGTTGATGGTGACAACAAGATCAACTTGCCAAACATCTCTA TTGAAACTATGTGCAAGATCAATGAGTATGTGAAAAAGCATGCAGAGGCTGTTGATCCTGCAAAAAATCTTGATGCCTGG GATGAAGAGTTTATTAAGGTTGGCTTAGACACTCTCTATGACCTACTCCAGGCATCATGTTACCTGAAAATTCAAAACCT TAATGATTTGGGATGTAAGACTGTAGCCAACATAATAGCGGGAAAGACCCCAGAACAAATTCGCCAAACTTTCAATATCA AGAATGATTTTACCCGAGAGGAAGAAGAGGAGGTGAAAGAAGAGTTCGCATGGGCCTTTGAAAAGAAATAA
Protein sequence (LotjaGi5g1v0348500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSTKVILMCYGGEVMEVHEALVNASPTLKSLIREKGVDGDNKINLPNISIETMCKINEYVKKHAEAVDPAKNLDAW DEEFIKVGLDTLYDLLQASCYLKIQNLNDLGCKTVANIIAGKTPEQIRQTFNIKNDFTREEEEEVKEEFAWAFEKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 155 | 155 | 3.4E-44 | ||
| Gene3D | 2 | 155 | 154 | 1.8E-45 | – | |
| PANTHER | 6 | 153 | 148 | 7.5E-44 | – | |
| PANTHER | 6 | 153 | 148 | 7.5E-44 | – | |
| SMART | 6 | 104 | 99 | 9.2E-11 | ||
| SUPERFAMILY | 8 | 68 | 61 | 7.85E-8 | ||
| CDD | 8 | 119 | 112 | 3.68262E-25 | – | |
| Pfam | 9 | 68 | 60 | 1.7E-6 | ||
| SUPERFAMILY | 77 | 152 | 76 | 1.83E-26 | ||
| Pfam | 105 | 152 | 48 | 2.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi5g1v0348500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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