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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0297400 |
| Transcript ID | LotjaGi2g1v0297400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|T2DMS9|T2DMS9_PHAVU SKP1-like protein; Found in the gene: LotjaGi2g1v0297400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77229502..77230768) extracted from Lotus japonicus Gifu genome v1.2.
AAGCGGAGGGACGCATCAATCTTGATTCATACGGCATCACGCACAAGCAGATTACTCCAAATTTAGTTGAAACTTTGAAA GGCATATTAGGCTTAGCGATTCATGGCATCTACAAGAATGATCACCCTAAAGAGTTCTGACGGTGAGGCGTTCGAGGTCG AGGAGGCTGTGGCGCTTCAGTTGGGGTGCATAGAGCACATGATTAAGGCTGATTGCGCCGATAACAGCAATATTGATCTT CCAAGTGTCACCGGCAGGATATTCGCCAAGGTTATTGAATACTGCAAAAAACACGTTGACGCTTCCCGTTCAGGCATCGA GGATCTCAAGCAATGGGATGCTGATTTCGTCAAGGTTGATGTGCCCACGCTCAAGGATCTCGTCAAGGTATGCATCTCTT CTCAATATTTTCTATGATTGGCAGATTTCGTGTTTTCATATTTAGTTTTTTTTTAATACTATTATGTGATGTGGTAATCG TTTATTATGAAATTTGGGATTAAGGTATTTGTTTGATTTTTATGTCATTACTAATACTATGATATCGCAGCCCTTCCTTA CATAAGAGGATGGGACACTTATCTGATAGGATTTTGCATACTTTAAGCAAATCTATCCCTTTTTCTATTCCTGCACATTT TACTTCTCATGATTATGCAATTTGTTCGAATTCTGTATGCATTTTTTATGCCCAACTACGCAGTAATGGATTACATATAT GGCTTTGGTCTTGGTGGCCTCGGCCAGCTTTTGCACTTTTAATGTTTGTTTGCAATTTGCGTTATCTATCATGAAATTGC TATTGACATTTTCCTGTATCAAATTTATAATGTTTTAATTCCATGTTCCATTGCTCTTCCTTTCAGGCTGCAAATGCTTT GGACATAAAGAACCTTTTGAATCTCACTTGCGAGACTGTGGAACTCATGATCAGAAATAAGACTCCTGATCAAATTAGGA AAATCTTTCTTCTTTAGTTTATTATACTGCTGAACTTCTGTTCCTGATCTTTTGTTGCATGTGGCTTAATGTCTCTTACA TTAGCTACGTTTGGTTCATTTGAATATTTGTTTTCTTGACACATTGCCCCAGATTCTCTCATTTTATTGGACAATTATAT GTTTGCGCACTCCACATGAGCATTTGAATATTTTGCTTTTGGTCCTTTTAAGTGCGAATACTGGGAGCTCGAGATTAAGG GTATATTTGATTATGTTTTTTTTTTTTTTATGCTTAAATGTACTTTTAATCCTCATTTAACGTGAAT
CDS sequence (LotjaGi2g1v0297400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTACAAGAATGATCACCCTAAAGAGTTCTGACGGTGAGGCGTTCGAGGTCGAGGAGGCTGTGGCGCTTCAGTT GGGGTGCATAGAGCACATGATTAAGGCTGATTGCGCCGATAACAGCAATATTGATCTTCCAAGTGTCACCGGCAGGATAT TCGCCAAGGTTATTGAATACTGCAAAAAACACGTTGACGCTTCCCGTTCAGGCATCGAGGATCTCAAGCAATGGGATGCT GATTTCGTCAAGGTTGATGTGCCCACGCTCAAGGATCTCGTCAAGGCTGCAAATGCTTTGGACATAAAGAACCTTTTGAA TCTCACTTGCGAGACTGTGGAACTCATGATCAGAAATAAGACTCCTGATCAAATTAGGAAAATCTTTCTTCTTTAG
Protein sequence (LotjaGi2g1v0297400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTRMITLKSSDGEAFEVEEAVALQLGCIEHMIKADCADNSNIDLPSVTGRIFAKVIEYCKKHVDASRSGIEDLKQWDA DFVKVDVPTLKDLVKAANALDIKNLLNLTCETVELMIRNKTPDQIRKIFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 131 | 131 | 2.7E-41 | ||
| Gene3D | 2 | 131 | 130 | 2.1E-46 | – | |
| PANTHER | 3 | 129 | 127 | 5.8E-50 | – | |
| PANTHER | 3 | 129 | 127 | 5.8E-50 | – | |
| SMART | 4 | 102 | 99 | 7.5E-38 | ||
| SUPERFAMILY | 5 | 66 | 62 | 8.63E-17 | ||
| Pfam | 6 | 65 | 60 | 5.6E-24 | ||
| CDD | 6 | 117 | 112 | 6.13972E-42 | – | |
| SUPERFAMILY | 73 | 129 | 57 | 7.72E-19 | ||
| Pfam | 103 | 129 | 27 | 2.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi2g1v0297400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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