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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0379100 |
| Transcript ID | LotjaGi2g1v0379100.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SWX0|I3SWX0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0379100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87584290..87585617) extracted from Lotus japonicus Gifu genome v1.2.
ACCACCATGTCTTCAGCGAAGAAGATCACGCTCAAGAGTTCCGACGGCGAGGCCTTCGAGGTCGACGAGGCGGTGGCGCT CGAGTCACAGACGATCAAGCATATGGTTGAGGACGACTGCGCCGACAGCGGCATCCCTCTGCCCAACGTCACCAGCAAGA TCTTGGCCAAGGTGATCGAGTATTGCAAGAAGCACGTTGAGGCTGCGAATCCCGATGAGAAACCCACCGAGGATGAGCTT AAGGCTTGGGATGCTGATTTCGTCAAGGTTGATCAGGCCACGCTGTTCGATCTCATCCTGGTTAGTTCTGATTTTCATTC TTCTTTAATTATTTTGATTCTGTTTCTGTTTAATCGATTATAGATTTGTCTTTGTTTGTTTTGTGATTATTTGGGGCTAG ATTAGGGTTTCTGCGTCTGGGAATTTGTGTTCTTCCGCTTTGCTTCTCTGATTACTAATTGTGTTATGTGATTGTGCAAT TCCGTGAATAATCGATGTTAAATAATCGATTCTGAGATTAATTGTTTGCAACTCACGAATTCATAGTTTGTTGTGAATAT CTTGTCAATTATTGGGGTATTTGACTTTACCCTTTGAACTGAACAATCAATGATGAAATAATCGAAGTTGATTTTGCATT ATATATAACGTGTCATGTAATGATGTTAAGTGCATGTAAAATTATCTATCAAGTAGAAGCACAACACTGTTGCCGCAAAC TTCAAAAGTAGAAGATTCTGTGATTTGGTCAAACAAATCGGAGCTGTTGAATGAAGATGGGGTGAAAATTTTGACCTCAT CAAATCGGAATCAAAACATGAACTCGTAACCTCAATTTCCAATCTTCATTTAGCGGCTATGGTTTGATGACTGCTGTATG TATTTATCTGTAACCATTATGTTGCCATCAAGCAATCTCCTTTGATTTATTGTTTGCAACTCATGAAGTTGTATTTGATT TTGAGAAGGTTTTTGTCAATAACCATTACAATATGCTTATTCTAGTTTATTCGCTGTGTTTGTTGTTCCTACTATGTAAG AAATTGAACAAAAAAAAAGGTATTTCTGCAATGGATTATTCCCTATTGCATTGTTCTATACTAGGGGCTAAGGCTGTTGA ATTGAATAGTGGAATGACAAATTTCTTTTTTCAGGCTGCGAACTATTTGAACATCAAGAGCCTGTTGGACCTTACATGCC AGACTGTAGCTGACATGATCAAGGGGAAGACACCCGAGGAGATTCGCAAGACCTTTAACATCAAGAATGACTTCACCCCT GAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA
CDS sequence (LotjaGi2g1v0379100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCAGCGAAGAAGATCACGCTCAAGAGTTCCGACGGCGAGGCCTTCGAGGTCGACGAGGCGGTGGCGCTCGAGTC ACAGACGATCAAGCATATGGTTGAGGACGACTGCGCCGACAGCGGCATCCCTCTGCCCAACGTCACCAGCAAGATCTTGG CCAAGGTGATCGAGTATTGCAAGAAGCACGTTGAGGCTGCGAATCCCGATGAGAAACCCACCGAGGATGAGCTTAAGGCT TGGGATGCTGATTTCGTCAAGGTTGATCAGGCCACGCTGTTCGATCTCATCCTGGCTGCGAACTATTTGAACATCAAGAG CCTGTTGGACCTTACATGCCAGACTGTAGCTGACATGATCAAGGGGAAGACACCCGAGGAGATTCGCAAGACCTTTAACA TCAAGAATGACTTCACCCCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA
Protein sequence (LotjaGi2g1v0379100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSAKKITLKSSDGEAFEVDEAVALESQTIKHMVEDDCADSGIPLPNVTSKILAKVIEYCKKHVEAANPDEKPTEDELKA WDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 3.5E-92 | – | |
| PANTHER | 1 | 155 | 155 | 3.5E-92 | – | |
| PIRSF | 1 | 155 | 155 | 4.7E-69 | ||
| Gene3D | 2 | 155 | 154 | 1.1E-79 | – | |
| SMART | 4 | 105 | 102 | 2.0E-55 | ||
| SUPERFAMILY | 5 | 65 | 61 | 1.49E-21 | ||
| Pfam | 5 | 64 | 60 | 5.8E-31 | ||
| CDD | 6 | 120 | 115 | 2.15047E-61 | – | |
| SUPERFAMILY | 78 | 153 | 76 | 1.44E-32 | ||
| Pfam | 106 | 153 | 48 | 2.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi2g1v0379100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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