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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0006400 |
| Transcript ID | LotjaGi5g1v0006400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|I3SES0|I3SES0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0006400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1500657..1501843) extracted from Lotus japonicus Gifu genome v1.2.
AATCAAAGTAACTTTAAAAGAAAATTCTAAAGTAACAAACACACAGTTCAGTATCTGGCATCACCGCATCACTCCATCCA ATCGAATTGGGAATTCTAGGGTTGGGGATTCATGGCTTCAACAGCGAGGAAGATCACCCTGAAGAGTTCCGATGGTGCGG CCTTCGAAGTGGAAGAAGCGGTGGTGGCGCTTCACTCACAGACCATTAAGGACATGATCAACGCCCACAGCGGCATCGTC GCTCTTTCCGATGTAACCGGCAACATCCTCGCCAAAGTGATCCAGTATTGCAACAAGCACAGTTCCGGTAGCGAGAATGA GCTCCGGCAATGGGATGCTGATTTCGTGAAGGTTGATCGGGACACGCTCTTCGATCTCCTCAATGTCAGTTAATTTTCGA AATTCACTTTGTGATTACTCTGTCTCTGTGTCTGTGTCTGTGTCTGTGTGTGTTGATTGCATTTTCTCTTTCAGGCTGCA AACAATTTGAAGATCAAGAGCCTTTTGAACCTTATTGTTCATACCGTAGCACAGATGATGAAGGGTATGAATCCTCAGGA AATTTGCGAGTTAACAATGAGAATGAGTGGTTTTAGACTCAGTTGATTAGGCAAATTTGATTTTCATCTTTTTACATACA GAGATAGATATATAGTTTTGTTTGATTGTTGAGGTATAAACTTGTGCAATTCTATTCTATACATCGATTTTCAATTTCCA GACCCTTAGCAGCAATACAAATGTCTTTGAAAGGCGACCAACCTCATTGCCATTGGTGGATTATATTTTTACATGGAATT ATGATTTGACTGAAGATATCTTGTTATGGAATTTGATTTGAAATGCATGACCTTTATCAAGTCTGAGAATATTTCCCTTT CCAAATGGTGACACCAGACACATTATAGCGGCTTTTTAGGATCTGAGTGATGGGGCTTCTTGTCATTCCATTTGGGAAAA TAATTCATATACACTATAACACCTCTACCTATTGAAATATAGAGTAAAAGATAGACAACTGTGAAATCTGATATAGATGA TGTGATAGAGAAAATGAGTGAAAATGAACGGAAGAGAATGAGAATGTGAATCTATCAAAACTTTTCCATTTGAGATGGGT GTGATGCCATTCTATTATGGACTAATCATATAAGGCCTTGTGTCTGGACATGCCACATCATATAATG
CDS sequence (LotjaGi5g1v0006400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACAGCGAGGAAGATCACCCTGAAGAGTTCCGATGGTGCGGCCTTCGAAGTGGAAGAAGCGGTGGTGGCGCT TCACTCACAGACCATTAAGGACATGATCAACGCCCACAGCGGCATCGTCGCTCTTTCCGATGTAACCGGCAACATCCTCG CCAAAGTGATCCAGTATTGCAACAAGCACAGTTCCGGTAGCGAGAATGAGCTCCGGCAATGGGATGCTGATTTCGTGAAG GTTGATCGGGACACGCTCTTCGATCTCCTCAATGCTGCAAACAATTTGAAGATCAAGAGCCTTTTGAACCTTATTGTTCA TACCGTAGCACAGATGATGAAGGGTATGAATCCTCAGGAAATTTGCGAGTTAACAATGAGAATGAGTGGTTTTAGACTCA GTTGA
Protein sequence (LotjaGi5g1v0006400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTARKITLKSSDGAAFEVEEAVVALHSQTIKDMINAHSGIVALSDVTGNILAKVIQYCNKHSSGSENELRQWDADFVK VDRDTLFDLLNAANNLKIKSLLNLIVHTVAQMMKGMNPQEICELTMRMSGFRLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 128 | 128 | 1.1E-36 | ||
| Gene3D | 3 | 131 | 129 | 2.0E-39 | – | |
| PANTHER | 5 | 124 | 120 | 1.7E-43 | – | |
| PANTHER | 5 | 124 | 120 | 1.7E-43 | – | |
| SMART | 5 | 98 | 94 | 1.3E-27 | ||
| SUPERFAMILY | 6 | 65 | 60 | 2.62E-13 | ||
| Pfam | 7 | 64 | 58 | 3.8E-17 | ||
| CDD | 7 | 113 | 107 | 6.1007E-39 | – | |
| SUPERFAMILY | 68 | 124 | 57 | 4.97E-17 | ||
| Pfam | 99 | 124 | 26 | 2.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi5g1v0006400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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