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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0344100 |
| Transcript ID | LotjaGi3g1v0344100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1; TAIR: AT1G20140.1 SKP1-like 4; Swiss-Prot: sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4; TrEMBL-Plants: tr|A0A1J7H518|A0A1J7H518_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0344100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72146014..72146904) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGCTGCAAACTCAGATTATACCCCTCTCTCTCTCTTTTTTTTTCTCTCTGTCTCTAGAATTCTCTCTGCAACAACAA TGGCGGCGGAAGCAGCATCATCATCATCCTCATCAAAGATGATATCACTGAAGTCTGCAGACGGCGACGTCTTCGAGGTG GAGCCATCGATTGCAAAACAGATGCAAACCGTGCAGACCTTCATTGCTGATGTTGACGCCGACGCCGACGCCGTCATTCC CCTCCCCAACATCTACACCCGAGAGCTCAGCAAGATCATCGACTACGGCAAGCAACACCGGGCCGCCGCCGCCAAGGATC ATGACGCCGAGTTCTTTAAGGAGGTGAACGACGAGGAGATGATGGAGCTGATTTTGGCCGCGCACTACCTGAACATGACG GATCTGTTTGAATTCCTGACCCAGGTCATGGCCGATCGGATACAGAACAAAAGCGTGGAGCACGTGCGGAAGGTCTTCCG TTTCGCCGATAGTGGTTACACGGCGAAGGAAGAGGCTGAGATCCGTGAAAAGAATGCATGGGCCTTCAAGGGCGTCGATC AGGACGATGAATGAGGGTTGAATTCTGCGGCGAAAGAATTAGGGTTCCGGAGTGGTTAATTATCTCAGAAATCTCAAATC AATATACATTAAAACCTGAATTTGATGATAATCCATGGGAAATATTTACTGTTCAGATTTGCAATTTTATTAATAAAAGT TGTTAAAATTTTCAAAATTAATCCATGGCATCTTTGGCCTTGACCTGCCTTGAAATTTAATCGAGCGTGATAGAGAATTC ATGGGAGTTTCAGACTTTCATAGGTTTTCTGAAATTTTATTTAATTCAAAGTTAAAATCAAAATTTGTTTTTTTGATCAT GTGAATTATTG
CDS sequence (LotjaGi3g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGGAAGCAGCATCATCATCATCCTCATCAAAGATGATATCACTGAAGTCTGCAGACGGCGACGTCTTCGAGGT GGAGCCATCGATTGCAAAACAGATGCAAACCGTGCAGACCTTCATTGCTGATGTTGACGCCGACGCCGACGCCGTCATTC CCCTCCCCAACATCTACACCCGAGAGCTCAGCAAGATCATCGACTACGGCAAGCAACACCGGGCCGCCGCCGCCAAGGAT CATGACGCCGAGTTCTTTAAGGAGGTGAACGACGAGGAGATGATGGAGCTGATTTTGGCCGCGCACTACCTGAACATGAC GGATCTGTTTGAATTCCTGACCCAGGTCATGGCCGATCGGATACAGAACAAAAGCGTGGAGCACGTGCGGAAGGTCTTCC GTTTCGCCGATAGTGGTTACACGGCGAAGGAAGAGGCTGAGATCCGTGAAAAGAATGCATGGGCCTTCAAGGGCGTCGAT CAGGACGATGAATGA
Protein sequence (LotjaGi3g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAEAASSSSSSKMISLKSADGDVFEVEPSIAKQMQTVQTFIADVDADADAVIPLPNIYTRELSKIIDYGKQHRAAAAKD HDAEFFKEVNDEEMMELILAAHYLNMTDLFEFLTQVMADRIQNKSVEHVRKVFRFADSGYTAKEEAEIREKNAWAFKGVD QDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 158 | 158 | 3.4E-35 | ||
| PANTHER | 7 | 162 | 156 | 1.9E-55 | – | |
| PANTHER | 7 | 162 | 156 | 1.9E-55 | – | |
| Gene3D | 10 | 103 | 94 | 3.5E-20 | – | |
| SMART | 12 | 106 | 95 | 1.9E-24 | ||
| SUPERFAMILY | 12 | 105 | 94 | 3.61E-11 | ||
| Pfam | 13 | 74 | 62 | 1.9E-15 | ||
| CDD | 14 | 121 | 108 | 7.82528E-21 | – | |
| SUPERFAMILY | 79 | 154 | 76 | 3.27E-14 | ||
| Gene3D | 104 | 157 | 54 | 8.3E-16 | – | |
| Pfam | 108 | 155 | 48 | 1.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi3g1v0344100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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