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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0131700 |
| Transcript ID | LotjaGi4g1v0131700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SKP1-like protein; TAIR: AT1G75950.1 S phase kinase-associated protein 1; Swiss-Prot: sp|Q39255|SKP1A_ARATH SKP1-like protein 1A; TrEMBL-Plants: tr|A0A1J7G3F5|A0A1J7G3F5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19272074..19274098) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCACCTTCTTCTCACAACGCATCACTCTCTCTCTCTCTGAAATCGAATCAGAAATCTAGGGTTTCGAATTCTCTCTC TCCCTGTCATGGCTTCCTCACCACCCAAGAAGGTTACTCTGAAGAGTTCCGATGGCGAGGCTTTCGAGGTTGACGAGGTG GTGGCGTTGGAGTCTCAGACCATCAAGCACATGGTGGAGGACGATTGTGCCGACTCCGGAATCCCTCTTCCGAATGTCAC CAGCAAGATCCTCGCTAGGGTGATCGAGTACTGCAAGAAGCATGTTGAGGCTTCCAGTTCCGGCGAGAAGCCTACCGAGG AGGAGCTTAAGCAATGGGACGCTGAATTCGTCAAGGTTGATCAGGCTACCCTCTTCGATCTCATCCTGGTTAGTTTCTTT CCTCAATTTTTTATTTTCTTTCGGAATTTTGTTTTTCGATTGGTGGGTATGTGTTGTTTTCACTGGGGGTTAGGGTTTTT GAGATTTGGGATTTTGGTATGTGTTTGATCCTCTGATTTAATTTGTTTTCTGTGATAGTTCTTGTGATTGTATATGAAAT TTCAGAATTTTCTGTATGTTGGTTCCTTTGATTTTGTTTATTTCTTTTGGGTGATTATTACTGTGTTGAAGTTGGGAACC ATGTCTGAAATTTGTATTGGGATCCCTTGCATAAAGAGGAATTGAGATTAGTTTTGATTGAAACCATTATAGATGCTTAC ATTCCTTCAATTTTGATTTCTTCATAGAATTGAATATGAGAACATGATTGATTCTGAACAGGATAGTACCATGTTAGGGA ATGGGAAAACACATTGTTTTTGTTTTTCATTAACATGCCATTCTGATTTTATACTGTTTAGTTGTGATATGGATTGAGGT TTTACATGTGGTGGGTTCTATCTTTGTTTTGCCCTTGATTCTGATCATGAGATTTAGAGGCAAATTCACTCTTGAGAGTA ATCCATGGTAGAAGAGATCTGCTTATATCCATGTGTTTATTTCATGAATTTTGTGTTGTATGAATTTTGTTTGTGTCTAC CTATGCCTCTGTTTTGTTCTTGGTGTTCTGTGATATTTTGCCTTTGAGTAATGCTATATGTTGTTACAGAACCTTAACTT TTGATCTTTTGTTTCTTTCAGGCTGCAAACTACTTGAACATCAAGAGTCTCTTGGACCTTACTTGCCAGACTGTGGCAGA CATGATCAAGGGGAAGACTCCTGAGGAAATTCGCAAGACCTTTAACATCAAGAATGATTTCACCCCTGAGGAGGAGGAAG AAGTTCGCCGGGAAAACCAATGGGCTTTTGAATGATTTAAGCCTTATTTGCCCTGTGTTTTCATGCTATAGCAGTTCCTA CTTCCTAGTTTATGTTTTTATGTTGGACCATCTTCTCGTACCAGACTTATTTAATCTTCAAAATGTAATTAATAGTTGAT TGTGGTGGTGGTAATGGTTTGATTCTGGAATGACGTTTATTGATAGTTTATCATCGACCTTCTATTGATCATATAAGATA CTTTTTGGTTCGCGACCCTATTTTTTGTCTGTTATTTTCGTTCATTTTTGGGTGGTTATAGTTTCTTATTTTAAGATTTC TGAAATAATTGAAAGGAAAAAAAAACTAATGGAAACTATTTTTCATAAGGGAGAGGTAGGACTTTGGGAATCATTAAAAT TAAAGGGAGTTTCTCATCTAGAAGGGATAGAGAGACCACGTTCTTCTAAAAGAGACGCTTACTTGAGTTATGGCTTTCTC ATGTTCCCTTGACATATGGCTTTTCCATGTTCCCTTCATAAAGGTCTTGCAGTACATTCCTTCTCTTCATAAGGTGCTCA ACCTTCTTTGGACTAATAGGATTGAAATGAAAGGAAAAACTTTGGAAATTCTCAAGGATTTAAAATCTTATGCAACTGTT GAAGTATAACTGAATTTATGGCTATCCCATGTTCCATGGCTCTTTTGAAATTGAAGGGATGGAATCAGAAAAAATAAGTA GGGGCGAATATCTAACATACTAAGT
CDS sequence (LotjaGi4g1v0131700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCACCACCCAAGAAGGTTACTCTGAAGAGTTCCGATGGCGAGGCTTTCGAGGTTGACGAGGTGGTGGCGTT GGAGTCTCAGACCATCAAGCACATGGTGGAGGACGATTGTGCCGACTCCGGAATCCCTCTTCCGAATGTCACCAGCAAGA TCCTCGCTAGGGTGATCGAGTACTGCAAGAAGCATGTTGAGGCTTCCAGTTCCGGCGAGAAGCCTACCGAGGAGGAGCTT AAGCAATGGGACGCTGAATTCGTCAAGGTTGATCAGGCTACCCTCTTCGATCTCATCCTGGCTGCAAACTACTTGAACAT CAAGAGTCTCTTGGACCTTACTTGCCAGACTGTGGCAGACATGATCAAGGGGAAGACTCCTGAGGAAATTCGCAAGACCT TTAACATCAAGAATGATTTCACCCCTGAGGAGGAGGAAGAAGTTCGCCGGGAAAACCAATGGGCTTTTGAATGA
Protein sequence (LotjaGi4g1v0131700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSPPKKVTLKSSDGEAFEVDEVVALESQTIKHMVEDDCADSGIPLPNVTSKILARVIEYCKKHVEASSSGEKPTEEEL KQWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 157 | 157 | 1.7E-68 | ||
| Gene3D | 5 | 157 | 153 | 4.9E-78 | – | |
| PANTHER | 6 | 157 | 152 | 9.7E-92 | – | |
| PANTHER | 6 | 157 | 152 | 9.7E-92 | – | |
| SMART | 6 | 107 | 102 | 3.1E-53 | ||
| Pfam | 7 | 66 | 60 | 2.5E-29 | ||
| SUPERFAMILY | 8 | 67 | 60 | 1.36E-20 | ||
| CDD | 8 | 122 | 115 | 2.16946E-60 | – | |
| SUPERFAMILY | 80 | 155 | 76 | 8.5E-33 | ||
| Pfam | 108 | 155 | 48 | 2.6E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi4g1v0131700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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