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LotjaGi5g1v0345600.2

Overview

Field Value
Gene ID LotjaGi5g1v0345600
Transcript ID LotjaGi5g1v0345600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit alpha type; TAIR: AT3G14290.1 20S proteasome alpha subunit E2; Swiss-Prot: sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5; TrEMBL-Plants: tr|I3S0W6|I3S0W6_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi5g1v0345600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:66214881..66219096) extracted from Lotus japonicus Gifu genome v1.2.

ATGTTTCTCACAAGGTACAAAACCCCTCTTTCCCTCTTTTCTTCGAAACTGGTAAAAAAATTGCATTTAAGGGTTTTTTC ATCTCGCTTGATTCAGCAGAAAAATGGGTTCTCCCCAAAATCTATTAGGGTTTCTTGTTTGCTTGTTCGTTCAATTGATA TTGGGTATGTCTGTGTGTGTGAATTAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCCCCTGAAGGCCGTTTGTTTC AGGTTGAATATGCAATTGAAGCCATTAAGGTATGCCTCTCCCTCACGATCTCTCTCCCTTTTCTTCTATTTTTATGAATC TGTAAGAGAACAAAAGGGTTCGCAGCTGTGAGAAGTTTTTTCATTCAGAATTTCATTGTTTTTGGCGGATTTGTATGGAA AATTGTAACTTTAGTGCTACCTTTTCTTTCTTTGGAATCAAATGTTGGTACTTGTGTTGGTATTTTTGTGTTTATAAATG GGTTTCTATTGGATTGCAGCTGGGATCAACTGCTATTGGGTTGAAGACGAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGC GTATTACTTCACCGCTGCTGGTATGGTTTTGTTCCATTTACGTAATTTGCAACTACATTAGTGGAGTTTTATAGTCTTAT TGTGACACTTCTGCACACAAATGTGCTAGTACTGTTAGCTATAAGTATACAGTTTGACTGTGTTAAAAGTGATTAAGGTG CATTTGGAGAATATCGATTGTTGACACAGTTGTGCTTCATATAAATTGAACTTTGGGGCCATCCTGTTGTTTTATAGATG TACTTATGAATCTTGAACTTTGATGTTCATCTTAGATAGTTAATGTGTGCTGTGCTTACTGTCACATACTTTGAAAAATG TTTACTTTGATCTTCTTTTCTCCTTCTATTATTCATTTTGTTTTTGGTGAAAAGAGATCTACTTTTCTTCGGTGGTTAAA GGCTTAATCGTTTGCTCTTTGGATTTGTACTTGCAATAAACCTCAGAATCTCTAACGATATTAATCTAATTTATAGTTCA TCTGGATTTTATAAACATGAGCGTCTTGGTGTAATCGCTTCTTCTTTGCACTGTGATTTATGTGGTTGCTTGAAACTTTT CTCTTTCAGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGCGCATATAGGTTGTGCAATGAGTGGATTGATTGC TGATGCTCGAACACTTGTTGAGCATGCACGAGTTGAAACTCAGGTAATGTGAACCTTATAGGATATTTTAGGTAGTTAGG TAGTTAGGTAGTTTATTAGTTAATGATTGATTTATATTGGTTTATTCTTCACAGAATCATAGGTTCTCTTACGGTGAACC AATGACTGTAGAGTCCACAACTCAAGCTCTTTGTGATCTAGCCTTACGTTTTGGTGAAGGCGATGAAGAGTCCATGGTAA AGAACTTCTTAGTTTTGATATTCATTTCTCTTTTTGTTTGCTTGCTTATGATGCTTTGATAAACGCCAAACAACTTATGA AGGATTTAGGTATTGCATTTGTTTTAAGAGATATTTGGTTTATATGGTCTATCACGAGAACTGATTCATGATAGCATCGT TTAATCCATGTAGCTGACCCTGCATAATGGATGTTAATTAGAGATATAAAAATGCCTATCAAAAAAAAAAAAATTAGAGA TATAAAAAGAGTTCATGTTATTTACTACTTCAAAATTATGGGTGCCAAGTGCCTACATGTCCACATCTCAACAGCAACTT TTGAATACATAACATTTCTAAGTAAAGCTGTAAATCCTTGTGTAAGGTGCTTTCATATACATGTGCCAGTAAACCTTTTC CTTCTGTACAAAATACTAAACTCTGGTGGTCCTGCAGCAGTAGACCATCCTGTTAGCATTCTAACTTATACCATATCTTT CTCTTTGGCAGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCAGGCCATGATGAGAATGGACCTAGTCTGTAAGTTTCC ATTCTTTCTAAGCAATTGCTACTTGTTTGTAATATGATGGGGTCACCCCTGTTACTCGTTTTCTGTATTCAACCAATGAT TGCTTTAAAGGTTTGTTTTTCTGAATCTATGATACTGGTGATCTTTTTTGAAATGATGGTTTTTGTTCCTTGTATCTTAT GGTTTGTTTTCTCTCTGGGGATCGGTGAACAAAGACAGGAATTCTGGGGGGAAAATGAATCAATTATTTATTTTTCTAGT TACTCTTATCACCTTATGTAGAGAGCGGTTCATGAGTAATCACTTGTAGACTTGATTAATTGAGGAAAAAACTACAAAAT AGGCCATAAATGTTCAAATGGGTCATTTATGCTTTTAGATGGAGCCAGGTCAGGTACTGGGGGTCTTGGGGCTGTGTTGG AAAAACTAGTCTGTAGTACACACGATAGGATCCCACTGACTTATGATTTTAAACATAGATTCCGCGAAATTGAGTTCCAA AGCATGATTGGGATTGATCTGGGTGCCCAATATTGTACAACCTTATGCGTCAACTTGCCATTTTAACTATCATGATTCAT GATATCCTCTTCTGTTGTTACGTCTTCCACTCTCTCTATTTTGTTTATTCTTAATTCTTCCTTTCTCAAAAAATAATTGT TAACGATATTTGCCATGTAGTACGTCCTCACCTTTTCTTATCATTATTTTTAGATTAAACTGTCTTAACAATTACTTTAT GCAAATACTTGTACAACAAAGAGAGAGATAAGAGGAGAGAAGTGTTGGATGTGGTGGTTGATATGATGGAGAGAGGTAGA GAAGTTGTTTTAGGTTCAGCAATATACCTCCTCTTAACATGGATTTGTGGTGTACACACATTTATTTCTGTTTGGTTTAG CCGTCTACCCTGCAAGTTCAATTCTCATAGCAAAGCATATATAATTGACCTCTTAGCTTCCTCATTCAAACTAGTTCATG GTAGCAAGCACTTTTTCTACCTTAAGCGTAAACAATTTTCTCGCTGTTCATGTATGTTAGAGATGCATTATTGCAGATTA TTGTTTAAACATAAAATAAATACACTGCATGGATATTTTGTTTTTAAAGCCTGGGCTCCATTACTTTAGTAACTGGATGG TGCTGTTTAGTCTACTCCTGCTGGTCATGTTCCTATGCCTTTTCATTCTGGGCTTCTTATCTATGCGCATGTTTAGGTTG CATTTTGCATCTTCCAAACCTTAGTTTGGTAAGTGTAAACTGAGTTTCATCCCCAAACAACATATATTGCAAAGTCACAT TGACTTACATTTGAACATAATTTTGAGTCTAATACCATGGTTTGAGTTAAAGCAAATTGAAGTTGCTTTCCTGTTGAATC AAATCCTGGTTTGCAAACCACTTTCCGAACATAGCTTTACTGAACTAGTGAATTCAAATGTTCTGATTTGCAGATATTAT ACTGATCCGTCTGGCACATTTTGGCAATGCAATGCAAAAGCCATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCA AGAACAATACAACAAGGTATCTATGTTCTTCAGTGGGTTGTTTCCAAACTTTTTATCCTGCTTATAACAGTAAAATTATA CTTGGCTGGGATTGGAAAGTAAATACAGGAGTGAAACATGAAGACATGAGTAGACTTCATATTTGACAGGGTAGGTAGAG AAGAATGAAAACATGCTATACAATAATTACCTTAATATCACATTATAAATAACATATCTAAGGGTTATAACACTAATCAA ACAATTAATTAATTTTATATGAAATCTAAAAAAAATCAATATTTACCTAATGCTTCATTAATTCACAAGATCAAACAAAC CCTGTCAATGATGATGATGAACAGACATGATATCTTTCATGCTAGAGCCATTAACATTAACATGAAATGAAAACAAGAAA ATTTGGTCTTAATTTATCATTTTGTGCAGGAACTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAACAG GTTATGGAAGAGAAGGTAAGGTTCAAATTAAATGCATGTACTTTTAATTGTTTGCCTTTCCCTCTGAAATGGAATGGAAA AAAAATCTAACTTGTTGCTTTTGCATTTTTTTTTCCATCTCAGGTTACTCCCAACAACGTGGACATTGCCAAGGTTTCTC CAACATATCATCTCTATACACCCGCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0345600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTCTCACAAGGACTGAGTATGACCGAGGAGTCAACACCTTTTCCCCTGAAGGCCGTTTGTTTCAGGTTGAATATGC AATTGAAGCCATTAAGCTGGGATCAACTGCTATTGGGTTGAAGACGAAAGAGGGTGTTGTCCTTGCAGTTGAAAAGCGTA TTACTTCACCGCTGCTGGAGCCTAGCAGTGTGGAGAAAATTATGGAAATTGATGCGCATATAGGTTGTGCAATGAGTGGA TTGATTGCTGATGCTCGAACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCATAGGTTCTCTTACGGTGAACCAAT GACTGTAGAGTCCACAACTCAAGCTCTTTGTGATCTAGCCTTACGTTTTGGTGAAGGCGATGAAGAGTCCATGTCTCGAC CATTTGGAGTGTCTCTCCTCATTGCAGGCCATGATGAGAATGGACCTAGTCTATATTATACTGATCCGTCTGGCACATTT TGGCAATGCAATGCAAAAGCCATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATACAACAAGGAACT AACTCTTCAAGAAGCTGAGACTATTGCTTTATCCATTCTGAAACAGGTTATGGAAGAGAAGGTTACTCCCAACAACGTGG ACATTGCCAAGGTTTCTCCAACATATCATCTCTATACACCCGCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0345600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDAHIGCAMSG LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTF WQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVISRL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11599:SF131
1 237 237 8.7E-166 –
PANTHER
PTHR11599
1 237 237 8.7E-166 –
Gene3D
G3DSA:3.60.20.10
1 237 237 6.9E-93
IPR029055
SUPERFAMILY
SSF56235
7 234 228 1.14E-76
IPR029055
CDD
cd03753
8 218 211 1.26425E-154
IPR033812
SMART
SM00948
8 30 23 7.7E-11
IPR000426
Pfam
PF10584
8 30 23 1.2E-13
IPR000426
ProSitePatterns
PS00388
8 30 23 -
IPR000426
ProSiteProfiles
PS51475
23 234 212 84.952
IPR023332
Pfam
PF00227
31 218 188 1.3E-63
IPR001353

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0019773
Cellular component Proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.
Subterm of
Part of
GO:0043161
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
Subterm of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0345600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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