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LotjaGi3g1v0323300.2

Overview

Field Value
Gene ID LotjaGi3g1v0323300
Transcript ID LotjaGi3g1v0323300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit alpha type; TAIR: AT5G35590.1 proteasome alpha subunit A1; Swiss-Prot: sp|O48551|PSA6_SOYBN Proteasome subunit alpha type-6; TrEMBL-Plants: tr|I3T518|I3T518_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0323300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:68842496..68847546) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCAAGTTGGTAC GTAACCCTCAGATTTCTGGTTTTTCCTTAACCCCTCGCAACGGCGACGTTTTAATCGCCCTAATTTGCTTCAGATCTTTC ACTTCTTGACCTACCCATTCACCAAGGTTTCTTAATTTTTGTTCCCAAATTCACTATTTTTTCCTTTTTTTAAAAAATAA ATGTTGCTATGCAAATTACACAACTTAACTGGGTAATTGTAGTGCCATTTTTTTTTCAATTTTGATGATTTAAAGTGAAA TTTCTGTGTACTGGACTAGTGAGCTAGGTTGCATGAATCTAAATAGGTTGTGTTACTTCTTTATGTTATCCCAAATTGAA AAAATATAAAACTATGTAATGAGCCTTTAGTTTTGATTTTTTTGAGTGAGTTGATTAGTTGTTTAGGTTTTAGTGTTCTG AGTTGTGGAGTTTTGAATGTGTTGAGCAGAGTATGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAATTGGTGTCC GTGGAAAGGATTCGATTTGTGTTGTTACTCAGAAGAAGGTTCCGGTGAGTTCACGAAGTTGGTTATTGAATCTTCTATTT TTCTTGTTTTGTGTGTTTGTGCTGGCTGCTTAAGATAGGAAGTTCTATGCAGGACAAGCTGCTGGATCAGACAAGTGTTT CACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCAACTGGCATGACAGGTATGTTTTTCATTATTTAATTTGTT TTAGGTATTTTTGATATTTATCTGCATGCTTTTTCACTTAAAAACAAATATGTTTTTAGGGAAAGTTGATTTAGGAGGCA TTTCGTAGACAATGTTCTTCATTATATCGTATCTTATAGTAAAATATAAAGTACAATTTTTGAATCTGATATCAACCTAG CAACTTGTTAGTGAGGGGAAAGTAAGAAGGCAATGGTGATTTTTGTGAGAGTGCTTATCATTCCTCTTGATAGTGACGTG TTGTTGGCACTTGGCAACCAATTCAAACCTCTGTCGTACAGTTTCACCTCTTTAATTTTATTTGGGATGCTGGTTATTAA TTTCATGTTCCTCTGTATAGAGTATCATTAGTAATCTGTAATGCGAAAATAGATCTATTAGAGCTGAATGCTACTGTCAA CATTGTGTCTAAGGATAACTTGACCCATGCTTACAGGTTCACATCACAGACAATGATAATATTGTTTTTCTATTACAATT GAAATCTGATGTATGATAAAATGTTTAGGTTTTAGCAGGAGAAAAAGAATAGTTTCTTTAAATTACAGACATATTTTGAA TTAAAATGTCTTTACATCACAAGTTCACTTTTGCTTTATCTCGTTGGAACATTTTTTTTTCAGCTGATGCTAGGACACTG GTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATATGAGATGCCTGTGGACGTATTAGCTAAATG GTTAGTGATTAAGTTTTTTTTGTAGTGTCCACTATAACCATTACTAGCTGCTTATTTCTCTCTTTCATATCTGCATTTCA AATTGTCATTATTTTGTTGTCAAGAATGTTATCTTTGCTTCTTTTCTTAATGTCCTAGAACAATGCATGGACGATCTTTC CTCTTCTCTTCAGTTTGTTGTCTCAATAGCCACAATGTCATAACATGTGCACCTGCTACTGGATTTGCAAATGGGAGATT ATATTCTTTATTGCTGCCATCCTGTTTGGAAATGGCAATTGCACACTTATGAGACTGTAATAAGCATCTGATGCATAAAA CAATGCAGGAATCATTATCACTTCTCCTTCCAAATAGCTGCTATTAACAGATCCAAGTTTAGGAATCATTGTGGCCATGA ATATTTAGCAAGCCATTAGAGCTTGCAACTATTTCTTACTCTTATGCTGTTGTTCTAACTTCTAATAGGGAGCCTGATGA TGAATGGCAAAATCATTTCAATATTAGACATAATTTAGTTTTAGGGTTTTATAGATGATTTTAATTTGTTGGGCATGATG AGCGAGTTCGTTAATTGCTGTCTTTCACTTTTCCAAGCAGGTTATATAAAGCCCATACTCTGGTAGTTATGTTAATAGTG GTGAAGTCAAGTGACTTATTTTTCTTTTGTATCTCCCATTCTCTCTTTCTGGGGCTCTGTGCCAGCTTCATGGTTGTTTT TTCCACTGTTTGTTAGATACTCATAGGTTAGACCACACGGGGGAAATAAGGAAGTGATAAGAATGGAATTGTGGGTTGGA GAAGTTTGTTTAAGAGGGAAAGGGAGGGGACTAACAAAATAGACAGGTGGCAGCAAGTCAGTAAGACATTGGAGAAGGGG GTGTTTGAAGCATGAAGAGGGAGGGGATTATTCTGGCACTTTTTGATACACAAGAGAACATATTTAATTGCTGAACACAA GAGAACATAGTTAATTGCAGAATTAGCTTTTGTCAATGTTTGCTACAAATGTAAGGTTTCAAGAACCCCCACCCCGCAAA AAAAAAACAGGTGAAGTTAGGAATCAGTACATATTGCGTACAACAGAGCTTTATGATGTGCTTCTAGTCACTTCACTATT TACAAAGCCTTTTTCACACCTGTGCTCTTAGATTACTATAACCTGATTAAAGTAATTCGTCTGTTGAAGCGACTGTAATT TTGACTTTTGTCAAAGGCTACATAATATATGACTTCATACATTTTAGGTTTTTACAATTTGACAATAACAACTTTTTTTT ATCTGACTTGTGATTTTTATGCTAACAGGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATGAGACCTCTT GGAGTAGGTATATTTTTTCTTAGCCTTTTCTCTACTGGACAACCTTCACCTCGTGTGGAAAATCACATAATTAGTTTTGT ATGGTCATAATAATTTTATATTTCTAGTACTTAGTGTTATTATTAATGTCATTTCCTCTTTCTATGATTTTGAATCTGTT GTGAAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGCCATTACTTT GGTCACAAGGTACATAGAAGTTCATCTATCACTCTAAAGTCTAAATATTGTTTGATCCTTTTAGTGTTATTATAGACAGA TAGACAAAAAATTAAGTGTCTGAGAATCTATAATGATGTACTCAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAAT TAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACCTATGAGGAGACAGTTCAGGTAGCATTTGTGTTTTCTC CCCCTAACTCCCATTTCACTAGCCAAATTTTTCATTGGAGATGAAGTTCTATAAAATTGATCATGTACTAGTTGTGGGGT TCCATCTGTCTAGCTTGACAAATTGACAGTCTCTAAGTTCAGTAAGTTGGTATAAAAAGTGTAGACCACTGACTTGTGAC TACCTTCTTATCACTGAGGACATGTGCGCGTTTAAGGATATTTTTCAACATTTTGGATTTTTGTCATTCTTTTGAGGATA AACAATAATATTCTATCCCTATTTTCCTCCTTTTCTGGCGACTCTTAAATTTTTCGTAATGAATGTTTACTATGCTTTTA TATTCTATCATTGGTCTGCATGAAAGTTATTGGATAAAATATGTTATGTATGTAGATGCTGAAGATTGGCTGTGTTTTAC CAAAAGGTGAAAAGTCTGAAAAATGTGTGGAATTTGATGTGAATGATCTCAGTGTTGGATCTTTTTCTGACTGGATGAAT AATGATTGATATGTTTTGTATTTCTAAATGTTCCTCAAGGAGGTCACAAACTTATATCTATGTCAATCGGATAATGTAGG AAAAACTAAACCTGTGATTCTGTGAATCCTCATTAAATTGTAACATTAATTGTGATATGATATTAATACTATCATTAGGT TTAGTTAACATTGTATATCGGCCTTAGCTTAAACCTTCAATTGTGTATTATGGGATTTGTTGCGTAGACTTTTATTCTTG CGACTGACAGTTTCTTTATTGTGTTATCTTATGAATAGTTACTGGTTTTTTTATTAAAAGAAGCTATAGTGTAATTGAAT ACACCTGAACCTTGTTTCAAATAGTTGTTGTTTATCAATTTTGTTGAAGAATTATCTGATGCTTTTAAGGTTCTAAATAT ATGATCTCCCTGCTTTGTTTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGAT TGAGGTAAAACTTCATTTTTACAGCTCAAGACATCCTCATCCCGTCAATTGAAGTTAGTGCAATTTTTTCAAAAAAAAAA ATTCTTTGAAGGATTTTGTTCGTATAGTCCCTGATGAGCTAAAACATGTTGTCTCTAATTTTTAACATTATTTGCAAGTT ACTTGCTCTTTATCATTAAACGATTCTGATGCATTTTTTGTCATGCTGTCTGGTGTTTTCCTTTACAAACTCTCTCGACA ACTCCTCATTACATGACTTTCTAGCTTTTGTTTTAATGTCAGGCAACTCAGGCCAGAGCATTTCTCTTTCATTATTCTTA GATGACAAATAGATCATATCATAATAGTCTATAATCTATGTTCCTGTCATGTTCAAGTGATTGTTTTGTGCATGGTTTTG GAAGATGGTTAATAACTATAACAGATGTTGCTTTTTAGATAAATGAATTGTAATGTTTAGTTGCTCCAGAATTGGGTTAT TTCACAGTTTTGAAACTAAATGCTTTCTGTGGCATAAATCAGCATGTTATAACATTTTTGTTCTTGACTTACATGCTATG GATGTTGAAAATTCTATGATAATTAACAAATACTACTTCCCTGGTTTGATTTAAATGATTGTATTTTGTGCTTTCTAGGT TGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTGACTGCAATAAGCG AGCGTGATTGA 

CDS sequence (LotjaGi3g1v0323300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCAAGTTGAGTA TGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAATTGGTGTCCGTGGAAAGGATTCGATTTGTGTTGTTACTCAGA AGAAGGTTCCGGACAAGCTGCTGGATCAGACAAGTGTTTCACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCA ACTGGCATGACAGCTGATGCTAGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATA TGAGATGCCTGTGGACGTATTAGCTAAATGGTTGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATGAGAC CTCTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGCCAT TACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGA CCCTTCATTTACCTATGAGGAGACAGTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGCCA CTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTG ACTGCAATAAGCGAGCGTGATTGA 

Protein sequence (LotjaGi3g1v0323300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVSHLFPITKYLGLLA TGMTADARTLVQQARNEAAEFRHTYGYEMPVDVLAKWLIADKSQVYTQHAYMRPLGVVAMVLGIDDENGAQLYKCDPAGH YFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTDEIDEHL TAISERD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 247 247 4.0E-90
PANTHER 5 247 243 5.1E-154
PANTHER 5 247 243 5.1E-154
SUPERFAMILY 8 246 239 3.26E-78
CDD 8 221 214 2.0486E-146
SMART 9 31 23 1.1E-11
ProSitePatterns 9 31 23 -
Pfam 9 31 23 2.7E-15
ProSiteProfiles 24 240 217 76.064
Pfam 35 221 187 3.2E-51

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Cellular component Proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0323300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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