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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1596960 |
| Transcript ID | Lj1g3v1596960.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: double-strand break repair protein MRE11-like [Glycine max] gi|356542248|ref|XP_003539581.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 691 | 691 | 0 | – | |
| PANTHER | 1 | 691 | 691 | 0 | ||
| PIRSF | 1 | 681 | 681 | 2.80E-211 | ||
| SUPERFAMILY | 3 | 58 | 56 | 8.73E-49 | ||
| Gene3D | 3 | 57 | 55 | 6.30E-56 | ||
| CDD | 7 | 257 | 251 | 9.14E-53 | – | |
| Pfam | 9 | 232 | 224 | 4.20E-10 | ||
| Gene3D | 90 | 283 | 194 | 6.30E-56 | ||
| SUPERFAMILY | 91 | 323 | 233 | 8.73E-49 | ||
| Pfam | 277 | 430 | 154 | 1.00E-39 | ||
| SMART | 277 | 430 | 154 | 1.10E-60 | ||
| MobiDBLite | 511 | 577 | 67 | – | – | |
| MobiDBLite | 597 | 692 | 96 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Double-strand break repair | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. | ||
| Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Cellular component | Mre11 complex | Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins. |
Expression pattern of Lj1g3v1596960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1596960.1, powered by CORGI.
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