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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2532300 |
| Transcript ID | Lj3g3v2532300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Serine/threonine phosphatase-like protein [Medicago truncatula] gi|357514393|ref|XP_003627485.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| PANTHER | 1 | 265 | 265 | 1.70E-117 | ||
| PANTHER | 1 | 265 | 265 | 1.70E-117 | – | |
| Phobius | 6 | 16 | 11 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 269 | 248 | – | – | |
| Gene3D | 67 | 239 | 173 | 1.20E-15 | ||
| SUPERFAMILY | 67 | 255 | 189 | 2.58E-26 | ||
| Pfam | 68 | 253 | 186 | 6.10E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of Lj3g3v2532300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2532300.1, powered by CORGI.
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