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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036005
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.224s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0481300.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460332 99464115 +
3 domain predictions
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LotjaGi1g1v0481300.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460373 99464115 +
3 domain predictions
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LotjaGi1g1v0773100.1
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT3G05350.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|D1ZKF3|AMPP1_SORMK Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|A0A0R0F3E9|A0A0R0F3E9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0773100 LjG1.1_chr1 134601449 134614119 +
3 domain predictions
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LotjaGi1g1v0773100.2
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT3G05350.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|D5GAC6|AMPP1_TUBMM Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|K7MZY3|K7MZY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0773100 LjG1.1_chr1 134601449 134614119 +
3 domain predictions
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LotjaGi2g1v0281000.2
n.a. Methionine aminopeptidase; TAIR: AT1G13270.1 methionine aminopeptidase 1B; Swiss-Prot: sp|Q9FV52|MAP1B_ARATH Methionine aminopeptidase 1B, chloroplastic; TrEMBL-Plants: tr|I1JDW6|I1JDW6_SOYBN Methionine aminopeptidase; Found in the gene: LotjaGi2g1v0281000 LjG1.1_chr2 75274541 75287685 -
3 domain predictions
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LotjaGi2g1v0393500.1
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT4G36760.1 aminopeptidase P1; Swiss-Prot: sp|D1ZKF3|AMPP1_SORMK Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|G7KC66|G7KC66_MEDTR Xaa-pro aminopeptidase P; Found in the gene: LotjaGi2g1v0393500 LjG1.1_chr2 89068791 89077975 +
3 domain predictions
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LotjaGi2g1v0400100.1
n.a. Methionine aminopeptidase; TAIR: AT4G37040.1 methionine aminopeptidase 1D; Swiss-Prot: sp|Q9FV50|MAP1D_ARATH Methionine aminopeptidase 1D, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0LM01|A0A0R0LM01_SOYBN Methionine aminopeptidase; Found in the gene: LotjaGi2g1v0400100 LjG1.1_chr2 89743672 89754725 -
3 domain predictions
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LotjaGi2g1v0400100.2
n.a. Methionine aminopeptidase; TAIR: AT4G37040.1 methionine aminopeptidase 1D; Swiss-Prot: sp|Q9FV50|MAP1D_ARATH Methionine aminopeptidase 1D, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0LM01|A0A0R0LM01_SOYBN Methionine aminopeptidase; Found in the gene: LotjaGi2g1v0400100 LjG1.1_chr2 89748729 89753598 -
3 domain predictions
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LotjaGi3g1v0194700.1
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194700 LjG1.1_chr3 28294998 28301896 +
3 domain predictions
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LotjaGi3g1v0194700.2
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194700 LjG1.1_chr3 28295466 28301245 +
3 domain predictions
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LotjaGi3g1v0194700.3
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194700 LjG1.1_chr3 28295466 28301245 +
3 domain predictions
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LotjaGi3g1v0194800.1
n.a. Methionine aminopeptidase 2; TAIR: AT3G51800.3 metallopeptidase M24 family protein; Swiss-Prot: sp|M1CZC0|EBP1_SOLTU ERBB-3 BINDING PROTEIN 1; TrEMBL-Plants: tr|A0EVX1|A0EVX1_9FABA EBP1; Found in the gene: LotjaGi3g1v0194800 LjG1.1_chr3 28310936 28318793 +
3 domain predictions
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LotjaGi3g1v0436800.1
n.a. Methionine aminopeptidase; TAIR: AT2G45240.1 methionine aminopeptidase 1A; Swiss-Prot: sp|Q9SLN5|MAP1A_ARATH Methionine aminopeptidase 1A; TrEMBL-Plants: tr|V7AMJ4|V7AMJ4_PHAVU Methionine aminopeptidase; Found in the gene: LotjaGi3g1v0436800 LjG1.1_chr3 84803828 84811575 -
3 domain predictions
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LotjaGi4g1v0441400.1
n.a. Xaa-Pro dipeptidase; TAIR: AT4G29490.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase; TrEMBL-Plants: tr|I1K635|I1K635_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0441400 LjG1.1_chr4 81503736 81510839 -
3 domain predictions
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LotjaGi5g1v0231700.1
n.a. Xaa-pro aminopeptidase; TAIR: AT1G09300.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|B5DEQ3|XPP3_RAT Probable Xaa-Pro aminopeptidase 3; TrEMBL-Plants: tr|A0A0B2P0L0|A0A0B2P0L0_GLYSO Putative Xaa-Pro aminopeptidase 3; Found in the gene: LotjaGi5g1v0231700 LjG1.1_chr5 53915285 53925468 +
3 domain predictions
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LotjaGi5g1v0231700.2
n.a. Xaa-pro aminopeptidase; TAIR: AT1G09300.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|B5DEQ3|XPP3_RAT Probable Xaa-Pro aminopeptidase 3; TrEMBL-Plants: tr|I1NEY0|I1NEY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231700 LjG1.1_chr5 53915395 53923857 +
3 domain predictions
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LotjaGi6g1v0051400.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211120 9216841 -
3 domain predictions
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LotjaGi6g1v0051400.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215140 -
3 domain predictions
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LotjaGi6g1v0051400.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215189 -
3 domain predictions
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LotjaGi6g1v0051500.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240360 9243974 -
3 domain predictions
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LotjaGi6g1v0051500.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240392 9245461 -
3 domain predictions
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LotjaGi6g1v0051500.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240765 9243974 -
3 domain predictions
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LotjaGi6g1v0067300.1
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|A0A151RPI8|A0A151RPI8_CAJCA Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12772422 12782415 +
3 domain predictions
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LotjaGi6g1v0067300.2
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|A0A151RPI8|A0A151RPI8_CAJCA Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12772588 12781633 +
3 domain predictions
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LotjaGi6g1v0067300.3
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12774360 12781220 +
3 domain predictions
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LotjaGi6g1v0067300.4
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12774377 12781220 +
3 domain predictions
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LotjaGi6g1v0067300.5
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12774380 12781220 +
3 domain predictions
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LotjaGi6g1v0067300.6
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12774386 12781220 +
3 domain predictions
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LotjaGi6g1v0067300.7
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12775535 12781220 +
3 domain predictions
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LotjaGi6g1v0067300.8
n.a. Methionine aminopeptidase 2; TAIR: AT3G59990.1 methionine aminopeptidase 2B; Swiss-Prot: sp|Q56Y85|MAP22_ARATH Methionine aminopeptidase 2B; TrEMBL-Plants: tr|K7MVR5|K7MVR5_SOYBN Methionine aminopeptidase 2; Found in the gene: LotjaGi6g1v0067300 LjG1.1_chr6 12776038 12781220 +
3 domain predictions
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