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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036420
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We have found 34 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.507s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0026600.1
n.a. Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0026600 LjG1.1_chr1 3202759 3213307 +
3 domain predictions
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LotjaGi1g1v0157100.1
n.a. DNA topoisomerase 2-binding 1; TAIR: AT1G77320.3 transcription coactivator; Swiss-Prot: sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1; TrEMBL-Plants: tr|A0A0R0FVP4|A0A0R0FVP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157100 LjG1.1_chr1 29157069 29168949 +
3 domain predictions
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LotjaGi1g1v0157100.2
n.a. DNA topoisomerase 2-binding protein 1; TAIR: AT1G77320.1 transcription coactivator; Swiss-Prot: sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A; TrEMBL-Plants: tr|A0A0R0FVP4|A0A0R0FVP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157100 LjG1.1_chr1 29157101 29168492 +
3 domain predictions
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LotjaGi1g1v0390500.1
n.a. Pescadillo homolog; TAIR: AT5G14520.1 pescadillo-like protein; Swiss-Prot: sp|Q9LYK7|PESC_ARATH Pescadillo homolog; TrEMBL-Plants: tr|A0A151TB86|A0A151TB86_CAJCA Pescadillo homolog; Found in the gene: LotjaGi1g1v0390500 LjG1.1_chr1 87407293 87413728 +
3 domain predictions
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LotjaGi1g1v0529200.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT2G33540.1 C-terminal domain phosphatase-like 3; Swiss-Prot: sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3; TrEMBL-Plants: tr|I1KWR8|I1KWR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529200 LjG1.1_chr1 105567118 105575319 -
3 domain predictions
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LotjaGi1g1v0668900.1
n.a. PAX-interacting protein 1; TAIR: AT2G41450.1 N-acetyltransferase; Swiss-Prot: sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1; TrEMBL-Plants: tr|K7KER9|K7KER9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0668900 LjG1.1_chr1 123160486 123172893 +
3 domain predictions
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LotjaGi1g1v0705900.1
n.a. breast cancer associated RING 1; TAIR: AT1G04020.1 breast cancer associated RING 1; Swiss-Prot: sp|F4I443|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|A0A0B2PNV8|A0A0B2PNV8_GLYSO Protein BREAST CANCER SUSCEPTIBILITY 1 like; Found in the gene: LotjaGi1g1v0705900 LjG1.1_chr1 127440182 127446734 -
3 domain predictions
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LotjaGi1g1v0711100.1
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127942347 127951960 -
3 domain predictions
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LotjaGi1g1v0711100.2
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127943481 127951891 -
3 domain predictions
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LotjaGi1g1v0711100.3
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi1g1v0711100 LjG1.1_chr1 127943481 127952773 -
3 domain predictions
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LotjaGi1g1v0744300_LC.1
n.a. PAX-interacting protein 1; TAIR: AT4G03130.1 BRCT domain-containing DNA repair protein; Swiss-Prot: sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1; TrEMBL-Plants: tr|K7MZF3|K7MZF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0744300_LC LjG1.1_chr1 131785708 131790904 -
3 domain predictions
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LotjaGi2g1v0251700.1
n.a. RING/U-box protein; TAIR: AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|I1N6L6|I1N6L6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251700 LjG1.1_chr2 71726160 71733037 +
3 domain predictions
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LotjaGi2g1v0314500.2
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 78998143 +
3 domain predictions
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LotjaGi2g1v0314500.3
n.a. DNA polymerase lambda-like protein; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|A0A072TY09|A0A072TY09_MEDTR DNA polymerase lambda-like protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
3 domain predictions
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LotjaGi2g1v0314500.4
n.a. DNA polymerase lambda; TAIR: AT1G10520.1 DNA polymerase lambda (POLL); Swiss-Prot: sp|Q9FNY4|DPOLL_ARATH DNA polymerase lambda; TrEMBL-Plants: tr|I1JCZ1|I1JCZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0314500 LjG1.1_chr2 78985926 79002829 +
3 domain predictions
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LotjaGi2g1v0337700.1
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700 LjG1.1_chr2 81476265 81488352 +
3 domain predictions
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LotjaGi2g1v0337700.2
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT2G31320.1 poly(ADP-ribose) polymerase 2; Swiss-Prot: sp|Q9ZP54|PARP1_ARATH Poly [ADP]-ribose] polymerase 1; TrEMBL-Plants: tr|A0A072U2F3|A0A072U2F3_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi2g1v0337700 LjG1.1_chr2 81476353 81488341 +
3 domain predictions
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LotjaGi2g1v0461300.1
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437511 95456871 +
3 domain predictions
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LotjaGi2g1v0461300.2
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437558 95455220 +
3 domain predictions
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LotjaGi2g1v0461300.3
n.a. DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300 LjG1.1_chr2 95437598 95456661 +
2 domain predictions
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LotjaGi3g1v0014900.1
n.a. DNA repair protein XRCC1; TAIR: AT1G80420.1 BRCT domain-containing DNA repair protein; Swiss-Prot: sp|Q24JK4|XRCC1_ARATH DNA-repair protein XRCC1; TrEMBL-Plants: tr|I1M5N0|I1M5N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014900 LjG1.1_chr3 1572809 1577182 -
3 domain predictions
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LotjaGi3g1v0106700.1
n.a. BRCT domain-containing protein; TAIR: AT4G02110.2 transcription coactivator; Swiss-Prot: sp|O70445|BARD1_MOUSE BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|V7BUV1|V7BUV1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0106700 LjG1.1_chr3 13181222 13191189 +
3 domain predictions
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LotjaGi3g1v0478100.1
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT5G22470.1 poly ADP-ribose polymerase 3; Swiss-Prot: sp|Q9SWB4|PARP3_SOYBN Poly [ADP]-ribose] polymerase 3; TrEMBL-Plants: tr|G7JIG7|G7JIG7_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi3g1v0478100 LjG1.1_chr3 89457033 89464168 +
3 domain predictions
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LotjaGi3g1v0478100.2
n.a. Poly [ADP]-ribose] polymerase; TAIR: AT5G22470.1 poly ADP-ribose polymerase 3; Swiss-Prot: sp|Q9SWB4|PARP3_SOYBN Poly [ADP]-ribose] polymerase 3; TrEMBL-Plants: tr|G7JIG7|G7JIG7_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi3g1v0478100 LjG1.1_chr3 89457110 89461273 +
3 domain predictions
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LotjaGi4g1v0203800_LC.1
n.a. Poly [adp]-ribose] polymerase 1; TAIR: AT1G67180.6 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|I3SQR6|I3SQR6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0203800_LC LjG1.1_chr4 47121278 47125416 -
3 domain predictions
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LotjaGi4g1v0287100.1
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|V7BX02|V7BX02_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 LjG1.1_chr4 65942422 65948231 -
3 domain predictions
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LotjaGi4g1v0287100.2
n.a. RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A0L9TRV4|A0A0L9TRV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 LjG1.1_chr4 65942641 65946510 -
3 domain predictions
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LotjaGi5g1v0246200.1
n.a. BRCT domain-containing protein family; TAIR: AT4G02110.2 transcription coactivator; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|A0A072VP53|A0A072VP53_MEDTR DNA replication regulator dpb11, putative; Found in the gene: LotjaGi5g1v0246200 LjG1.1_chr5 55477637 55484893 -
3 domain predictions
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LotjaGi5g1v0246200.2
n.a. BRCT domain-containing protein family; TAIR: AT4G02110.2 transcription coactivator; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|A0A072VP53|A0A072VP53_MEDTR DNA replication regulator dpb11, putative; Found in the gene: LotjaGi5g1v0246200 LjG1.1_chr5 55477707 55485012 -
3 domain predictions
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LotjaGi6g1v0235200.1
n.a. DNA ligase; TAIR: AT5G57160.2 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200 LjG1.1_chr6 54499461 54514433 -
3 domain predictions
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LotjaGi6g1v0235200.2
n.a. DNA ligase; TAIR: AT5G57160.1 DNA ligase IV; Swiss-Prot: sp|Q9LL84|DNLI4_ARATH DNA ligase 4; TrEMBL-Plants: tr|K7MBU8|K7MBU8_SOYBN DNA ligase; Found in the gene: LotjaGi6g1v0235200 LjG1.1_chr6 54499906 54514392 -
3 domain predictions
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LotjaGi6g1v0299000_LC.1
n.a. Protein BREAST CANCER SUSCEPTIBILITY 1 like; TAIR: AT1G04020.2 breast cancer associated RING 1; Swiss-Prot: sp|F4I443|BARD1_ARATH BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|A0A151QZT5|A0A151QZT5_CAJCA Protein BREAST CANCER SUSCEPTIBILITY 1 isogeny; Found in the gene: LotjaGi6g1v0299000_LC LjG1.1_chr6 61682055 61685978 +
2 domain predictions
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LotjaGi6g1v0304700.1
n.a. PAX-interacting protein 1; TAIR: AT3G21480.1 BRCT domain-containing DNA repair protein; Swiss-Prot: sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1; TrEMBL-Plants: tr|K7MAL7|K7MAL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304700 LjG1.1_chr6 62191622 62198773 -
3 domain predictions
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LotjaGi6g1v0312100_LC.1
n.a. breast cancer associated RING 1; TAIR: AT4G21070.1 breast cancer susceptibility1; Swiss-Prot: sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; TrEMBL-Plants: tr|V7BPN4|V7BPN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312100_LC LjG1.1_chr6 63054122 63059920 -
3 domain predictions
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