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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0251700 |
| Transcript ID | LotjaGi2g1v0251700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box protein; TAIR: AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein; Swiss-Prot: sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110; TrEMBL-Plants: tr|I1N6L6|I1N6L6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71726160..71733037) extracted from Lotus japonicus Gifu genome v1.2.
TATAGCATTTCTGATTTTCTATATAAATACAGAACTACTCGTCAGGTTTTGCTCCCAAAATTCAAAATTTTCACATTTCC CGCAAACACTCTCTGCACTCTGAAAGCTCCCATGGAAGCCGAAGAGGAAAATGTAGACCCCACACTTCCTCAACCCACTC AATCTCACGGTACCTCTCTCTCTGTCTCTTCTTAGGGTTCCGATTCGTATACTAATCTACCCACAAAATTTCTAGCTCAC CAACAAATTGACCACAATTCTCTGTGCTAGGGTTCCGTTCATTGCGATTTCCGATAATCTTAGCTCCGATCTGCCCCCAA TTCTCACATCTGACACCGTTTTCTATTGATTTTTTCTGAATTTACAGCTTGTCCGATTAAAGATATGGAGCGGGTTGTGG CCACAGTCACTGGCTACCATGGCTTGGAGCGCTTCAATCTCATCAAGCTCATTAACTACGCCGGCGGCAGTTACTTCGGC TCCATGTCCAAATTAATCACACACCTCGTAAGTATTTAACTAACTTATGGTTCTACTGAATAGATCGTGTTATCGCATTT GAGTCCGGGCATTAGTTTTGGTACCATCCTCACACATTCTCTTACCACCCGAATTTACGGCATTTATGTTTGCGGGAAAG AATTACATACCGGATTTAAAATTGCGGAATACAAACCATACCTCCCGCAATCATGTTTGCGGAAAAATGCAAAATAGGCC AATGGGTGTTGGTATAACTTATGAGAATGTGAAGGGGTGGTACAAAAATTAATGCCCTTTGTGTCCTTGTTCTGTTTATG ATGTAAAATATTTCATGTTGGACTGGTCAGGTGTGTTGGAAGTTTGAAGGAAGGAAATATGATATTGCTAGAAGGCTTAG CATACCTGTAGTCAACCATCGTTGGATTGAAGATTGCATAAGGGAAGGAAAGCGCCTCCCGATAGATTCTTATACCTTGC AAAGGTGATTTTGTTGTTTATTTTGGTCTTTCTGTCTATTTTTTTGAATTGAGAATTTTGTTTTCCAGAAATTATATTAA ACCCCTACTAGTCTGATTTGAGGTCAGAGGGCCTGTTTAAAATTATAAAACTCTGAACATTGGTTTTTTTTTTTTTCATT CGCAAGAGTCAACTTTTTCCTAGTGGAGTTATGCCATAGTGCATTGGGTTTTGAAAAAAAAAAAAGAAAACAAGATGAGA ACTTACCTTTTAATGAATTAGAGTAACTATTGAAAAATGCTTAAATTTGATCAATTTGATTTGGCAAGGTTTGCTTTAAG CTGTGTTGTGGCTTAACCTAAAATTTACTGTAGATAACCAATCTCTAGGCTTTAAAGGTATTAGTGAATAGTCATGACTG ATGAGTAAGAAAGATTGAAGTGTAATCTGAACTGAATGATAACTGAATTGCATTGTAAGATGAGTACGTGCACACTTATT TAGCTGATGTATGAATGTATGATCTAACAGAAAGGTTAACAGAATAACAATCTCTAACCAAGTTTAAACTTCTGCAGCTA AATGCTAAGTAGTTTGACTAATTTCCCTTCAGGCCTGAATCTAATATTTTGTATATTTTTGGGAAGTTCTTGGTTGATGT GCTACAGCTTTTTGCTTTTGGGGAAGTTGGTTCTTAACAGTTTTGATGTTCAAATGCTGGATATCTTATGTTATGTTATG AGATGGCTTTTTAGCTGTGGACTCTCAATTTTGGCACCATTGATAACATGATTGTTTTGTTTGGAGAATTCTGGGGTGCT ATTACTTGATTATGTAGGATTTCTGGTTACTAGTTACATCCCTTCCCTATAATCTGCGATACAGTAAAATTTGGAGAACT CTTGTTCTTATCATCACTTATTAGTATTGTTGTTATCTTCAGTGGACATGAAGTAGGGCCATTGTTACTGGAAGTTCCAG CCTCCTTTGGACCGAGCAGCTGGATAAAGAATAAAGGGGTTAGTGATGGCTTATGTGATATTGAGTCTGAAAGGCAAATT ACAGACATCAGTTTTGGAGCTCCCAGTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGGTAACAATAGGCCCTCTGCT GTTTCTGTTCTCCTCTTGCTCGTTTTCAATCTTTATGATGTACATTGTCTGTGTTCGCTTGATTTCATTCATAAACACAT TGCATCATTTTCTGAGTTGGCCGTAACTATCATATATAAACAGTCGATTCTTAATCATTAACTCAAATTCTTATTTACGT GCCCTAGGTGTTCCATTCGAATCTAATGTTTTCTCATGGTACCAACTCAGGTTTCTACTTACATTTTTTGATACTGCATA GATTAAGGAAGTGCTTCTTGGTAGTAACCATATATGGTACTGACTACTGAGTCACAGTGGCAGAGCAAGAGGATTTTTTC CCCTTCAATTGCTTTAATTGATTGTCGAAGTTGTGTAAACTTTGTGGCTTTTCTGGTGTTTTGGCACGAAGGGTTTATAA TAAAATTTGTTGCCAAAATCACTTATTTGTTGTTAGAAATATAATATAAAACCATTCAAAGTTCTTTACCTGAGCTTAAG CTTTTGGGATAACTTGTTCATGACATGGTATCAGAACCTCTATCGCTACGTGGTCCAGAGTTTGATCCTTGTTGCCCAAT TATTATAGTAAAAAGCGGAATTTCAGCACATGGTAGGTGGTCCTGTGCATTGTCCATGCTTCAAGCCGAAATGGTTTATT GCGTGAGGGGCGTATTAGAAATATAATACAAAACTATTTAGAGTCCTTTACCCAACAACTTAAGCTTTTGGGATAACTGG TTCATGACATCTATCTACAGAAATAGATATATCTATTTGTTGTGTGCATGATTGCTTTTCTCACAAATACTTTACCATGT AGTGTTTTCTCCTTGAAGTGCTCAACTAAAGAAAAGTATATGTCATATGGTTGCCATAAGTATGAAGGTACTTTTAAGCA GCTAATGCAACATACTGAACACTATAAACTAGCTGTTTATCTGAAAGAACTGTTTTGACAATCTTTTAATCCTTTTCCTC ATTCCAGGTGCTTTAAAGTACTTGCACATACTATAATTTTGAAAATAGCATTATGTTTAAATACATTGCATGTGTGTTTT AGGTCCAATTACACAATCGTAAGTGAAAATTGTTTTAAACCTATCGATATAAGGGGGCTTAAATACCTTTTTGATGTGAT ATGCTAGATTGACATACCAAGTAAATGAGTCATAAAGTAAGTTTCCTTTCTTCTGGAATGTCTGTTATTCTTACTTTATC CTAATTTTCCATTTTCAAGTGCGAGGAGACAAGTTTGCATTCATCTAGACGGTTAAAGAAGGTAAAAAGAAATATTTCCT GTGATAATGAAGTTAGTACTGCGGCTGGACCTTCTCGCAAGGAAAGAAAGTTTGTGAAAAAGGTTGTTAATGAAATGGTG TCAGATCCTGTGATTTTGGATTTAAGCCCAGATGACCGGCTTTGCAGAAGGGATAGAGATAGATTACACACTGAAGCTGC AGCTACCTCTAGCCTTTCTGGTTGTGTCGATGTTAACGATCTTCAAGAAAACAGTTCAGGACCTGATGCTAGATTATGCA ATCAAAATAGAGCGATGAATGGAAGTTCAGATGGCATCGAACAGATCACAGATTCAAATCAAATAGAAGATCCCCAACCT GTGGAACAAACATCAATAGATTTATGTTCCAGTGCTGGAAAGTTTATTGATGGTGATCAGGTTGATAATGTTGCTGGCTC TCCTACTTCGAATGAGTGGTCATGTGTTATATGTTTCGAAGATTTCAGTTCAACATTGGGGGTTTTGCCATGTGAACATA CGTTTTGTTTGACATGCATCCAGAGATGGGCTCATCAAAGGGTATGCCTTTTCTTTTTCTTTTCTAGTTTTTTTTGTCAG TCCTGGGATAAAAATCTATTCATTGTTTAATGATGAGTATAGAAGTCTTTGTTGCTTGCCATTTTCTTTTGAATTGATTT TAAAGTTTTGTTCTATAGTGTTTTAAATGCTGACCAATTTGTTCAACCAATACTAATTTCGTCTATGATTTCTCATTGGC AATTTAAAGAGCCTCCTAATTGACATTGTTCCACCTTATTTTTTTAATTCAACCAATATGCAAGTGTACGTATAAATGTT ATTCAACCTAAGGTTTTGAAAATTCCCCCTTCAACTTTGAATATGTTTTCAAAAAATTATATTTGAAGATTTTAATTATA TGTGGCATCAGTATTCAAATTACTTCTTGAATTCTCTTTGTAAGATTGATGGCACAATGTCGTGACGCTCAACTTGTTTA CATATTAAATTATTTCAGCTCTGGTACAAAATTTACTATACAGATAAGATTAGAATATATGTACATAGATCTATTTATTC ACTTAGCGACTCATTGAGAAACAATAAATTGGATTTACCTAGAGAATAGAGAGTATAGTTAACCAAAAAAAAGACTTAAA TAAAGGTCGAATGGGTCAGTATCTTTAATAATACATCGTTTTACTTTTTTTCTTCTTCTATATAGGCAATGGTAAGTCTA TGAAGTCTATGTAAAATGATCTGTGAAGAGTTACTTATTTTTTGGGTTGACAATTTTGTAGCATGGATAGATAAAAATGG TTACTAGACACACTGATTAGAAGTCTTGTGGCTATAAAAATAAAACATGGGCTTCTCATTCTATTATCTTCAACTATGAA AGGACGTTGTTACATTTTTCTTTATTTTAAGTTAAAGGTTTTTTTTGCTTTTGTAGTATTTCTTGTTGTTTTAATTTTCT CATGCAATAGCTCGTGGTTTTCATGTGGAAAGTTGAATGGACTATATAGAACTTGTTTGTCCTGTATAGCTTCACTCTGT AATTTTCATTTGAACGTTTCTTTCATTTTCATAATGGTTTTCTCTATTTATAGATCTCAATGGGAAAAATATCAACCTGC CCTCTGTGCAAGGCAAGTTTTGCATGGTACAAGATATTTGAGCATGCAGCCACAGCTGATAAAAAATTAAACTCCCAGAC AGTCCCATGTGACAATTTGGCCTCAGTTACTTATATCCCCATGGATCAAGAATTACCAGATAATAGCTTTGAGGTATGCT TGTACATTAAATATATTCATCAGTGTGCTATGTAGGTCTTGTTTTCTTTCTATTTTCATATTAGTTGAAATGAAAGTAGT AGCATCTCTAGCTATTTCTTTCATGTGGCTATCTCTAGCTACTTTAAGACACAGGGCAGACCATGTATGGTTTAGAATGA GAAGCTGCCTTGTGTGTCGGTACTAAAAAAGCTGTGGAGTTTTATATTTTGGCATTTTTATATTCCTGACATTTTGATTA CTATCAAGTTATTTAGTGACATTGTGCTTCTGAATTACCGAAAGCCTTTAATGTGAGCAGTACTATCTTGAGGAATTTAA CATGACTTTCATACTCTTTTTTGCTTAACTTGGACGGCTCATATTTCTCGCAGTTTGATTGATTGCAACTACCATTAGTT AGAAATGAAGGAAATCTTTCTGCCTGAAAAGTATAACGATACATGAGCTGGCAACTTCTTTTTCACTGAAAGGAAATTTT TTGTTAGTTATTTGGCTTGCCTGTTCTGGGCCCTTGTTTGTGTGACAAAATCGATATTCTCACTAAAAGCCTTGTGATAT CTTGGGCATGATTTGGTAACATAGGATTCCACTTTGATAATGTTTGCTGAATTATGCCTTACCGTGTAGTCTATGATCCC GATGATCTGTGAAGCTTATTACCTGTATATTGAAATTTAATGGGCTATTAGCGTGTGATTGAATAAATCCCGAGAAATAT ATGTTAGATGTATTATATAAAACCATTCCTATATCTTGTTAATTGGTTCATGATAAGATATCTGAAAAAATATGATTATT TTCTTTTATTGTTGTGAATGGCCAATCTTTGGGATAATTCCCCTAAATGCATTGCTCATCTCTCCACAGAGAAGGGAAGA ACTGAGAGTATCTCTGACTTTCCAATTGAGGCTCTCAAATATCTAAGATTATCTCATAGCCCCCTAAAAACAAAATCTAC CACTTTCTAGCAATCTTACAATAAAAAAGCATCTTCAATTGCGGAGATCGTGTGCAAAACTGCTTAATAAATCTGCAAGA ACTGTGGCTTCTTATATTTTCATCAATTATGTTTGAATAATTCATTATTATCTACATTTTTGCTGGAAGTTTATGCACAT TTAGCATGATTGACACATTGTTTGTGTTTTGCTTTTACAATCGTCGCAGGATGGCGCTTGTGTAGTTTGTCGTACTCGGG GCCCTGATGATCTCATTGAGACTTGCAATGTTTGTTGGACTCGAAGAATCCATTCCTACTGCATGGACCCCCCTACATAT CCTTGGACCTGCACGCACTGCAAGGAACTTCGTATGCTTTATCGTAATCAATCATATTAGTTCGAATCTTTTTATCCATT ACTACTCATGGAATGGAGCTCCTAAGCATGTCCGGAGTCAAATGATGTTTTCAGAACATTGCCTGACTGAAATTCATTGT TATGGATGGGAACTGTGATGTTGTTGTTTACATGAAGCGAAACTGTATTTTGCATTTATAAGTGATTTAACTTAAAGCTC TACAGGACTGTAATGTAAGCGCATGCTTGGATAGTACAATTTTTCTAGTTTACTTTGCTCAAGAACCTTTTGGATGGTTA ATATATTTTAGACATAGGACTTTATTTGATAATTTTTTTTTTCAATTGAGGAAAAGTATGTGATCAGTATGAGATATTTT GAGCTAACTATTTTTTTTAGTTTTCAGTTAAGAAAAGTTTATTCTGTGTCATAATCGTAAAATATAACTATATTTATA
CDS sequence (LotjaGi2g1v0251700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCGAAGAGGAAAATGTAGACCCCACACTTCCTCAACCCACTCAATCTCACGCTTGTCCGATTAAAGATATGGA GCGGGTTGTGGCCACAGTCACTGGCTACCATGGCTTGGAGCGCTTCAATCTCATCAAGCTCATTAACTACGCCGGCGGCA GTTACTTCGGCTCCATGTCCAAATTAATCACACACCTCGTGTGTTGGAAGTTTGAAGGAAGGAAATATGATATTGCTAGA AGGCTTAGCATACCTGTAGTCAACCATCGTTGGATTGAAGATTGCATAAGGGAAGGAAAGCGCCTCCCGATAGATTCTTA TACCTTGCAAAGTGGACATGAAGTAGGGCCATTGTTACTGGAAGTTCCAGCCTCCTTTGGACCGAGCAGCTGGATAAAGA ATAAAGGGGTTAGTGATGGCTTATGTGATATTGAGTCTGAAAGGCAAATTACAGACATCAGTTTTGGAGCTCCCAGTTAT GTTTTGGAAGATTCTTGTTTAATGAAAAAGTGCGAGGAGACAAGTTTGCATTCATCTAGACGGTTAAAGAAGGTAAAAAG AAATATTTCCTGTGATAATGAAGTTAGTACTGCGGCTGGACCTTCTCGCAAGGAAAGAAAGTTTGTGAAAAAGGTTGTTA ATGAAATGGTGTCAGATCCTGTGATTTTGGATTTAAGCCCAGATGACCGGCTTTGCAGAAGGGATAGAGATAGATTACAC ACTGAAGCTGCAGCTACCTCTAGCCTTTCTGGTTGTGTCGATGTTAACGATCTTCAAGAAAACAGTTCAGGACCTGATGC TAGATTATGCAATCAAAATAGAGCGATGAATGGAAGTTCAGATGGCATCGAACAGATCACAGATTCAAATCAAATAGAAG ATCCCCAACCTGTGGAACAAACATCAATAGATTTATGTTCCAGTGCTGGAAAGTTTATTGATGGTGATCAGGTTGATAAT GTTGCTGGCTCTCCTACTTCGAATGAGTGGTCATGTGTTATATGTTTCGAAGATTTCAGTTCAACATTGGGGGTTTTGCC ATGTGAACATACGTTTTGTTTGACATGCATCCAGAGATGGGCTCATCAAAGGATCTCAATGGGAAAAATATCAACCTGCC CTCTGTGCAAGGCAAGTTTTGCATGGTACAAGATATTTGAGCATGCAGCCACAGCTGATAAAAAATTAAACTCCCAGACA GTCCCATGTGACAATTTGGCCTCAGTTACTTATATCCCCATGGATCAAGAATTACCAGATAATAGCTTTGAGGATGGCGC TTGTGTAGTTTGTCGTACTCGGGGCCCTGATGATCTCATTGAGACTTGCAATGTTTGTTGGACTCGAAGAATCCATTCCT ACTGCATGGACCCCCCTACATATCCTTGGACCTGCACGCACTGCAAGGAACTTCGTATGCTTTATCGTAATCAATCATAT TAG
Protein sequence (LotjaGi2g1v0251700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAEEENVDPTLPQPTQSHACPIKDMERVVATVTGYHGLERFNLIKLINYAGGSYFGSMSKLITHLVCWKFEGRKYDIAR RLSIPVVNHRWIEDCIREGKRLPIDSYTLQSGHEVGPLLLEVPASFGPSSWIKNKGVSDGLCDIESERQITDISFGAPSY VLEDSCLMKKCEETSLHSSRRLKKVKRNISCDNEVSTAAGPSRKERKFVKKVVNEMVSDPVILDLSPDDRLCRRDRDRLH TEAAATSSLSGCVDVNDLQENSSGPDARLCNQNRAMNGSSDGIEQITDSNQIEDPQPVEQTSIDLCSSAGKFIDGDQVDN VAGSPTSNEWSCVICFEDFSSTLGVLPCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHAATADKKLNSQT VPCDNLASVTYIPMDQELPDNSFEDGACVVCRTRGPDDLIETCNVCWTRRIHSYCMDPPTYPWTCTHCKELRMLYRNQSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 18 | 109 | 92 | 18.18 | ||
| PANTHER | 21 | 130 | 110 | 2.7E-123 | – | |
| Gene3D | 22 | 114 | 93 | 3.6E-22 | ||
| SMART | 23 | 99 | 77 | 2.3E-14 | ||
| SUPERFAMILY | 25 | 110 | 86 | 1.57E-21 | ||
| CDD | 29 | 101 | 73 | 9.18759E-24 | – | |
| Pfam | 29 | 91 | 63 | 3.2E-19 | ||
| PANTHER | 169 | 477 | 309 | 2.7E-123 | – | |
| Gene3D | 316 | 423 | 108 | 3.2E-14 | ||
| SUPERFAMILY | 327 | 383 | 57 | 6.45E-16 | – | |
| Pfam | 331 | 377 | 47 | 2.5E-8 | ||
| ProSiteProfiles | 332 | 377 | 46 | 13.271 | ||
| SMART | 332 | 376 | 45 | 2.1E-7 | ||
| ProSitePatterns | 348 | 357 | 10 | - | ||
| SUPERFAMILY | 418 | 471 | 54 | 5.54E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0251700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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