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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287100 |
| Transcript ID | LotjaGi4g1v0287100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|V7BX02|V7BX02_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65942422..65948231) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCAATCAAAGCAGTTAAAAAAAATAAAAAAAAATAAATAGGGCCATCGAAGAGTCCCCTATTTTTAACACTGACC AAACAGAAAACAAATTTAAGGGGACGAAGTAGCGGTGAACTCCTCCTCAAACGCAGAGAGCGTCGTCGCCGGTGGAAGCT ACTTCACGGCGGAAACCCTCTTCTTCCCGCGGCACCACCGCGATCTCCGTTTCATCCACTTCATCACCTTCACTGGTCTG CAATCTTCAAACGACGATAACCTCCGCGCTCTCACTCCTCTCCGACTCCAACCCTTGCTTTGCTTTTCAAGGTCGATTTT CTTTTTCCCTTAATCCTGCGTCTTGTTTATTCTATTAACTAGTAGCAAAACACATTCATTTTCCTCTTCCACATTCTCAA TACTCTGTTTCTTCGTTTCAAATTCAATCCCCATTCATCAGATGCCTCAGTTTTTTCTTTCTTGCTTTAGGTTTTCACCT GTCTTTTTTCTAATTGATTGTGCTGTGGTTTTTATAATCTCTTTGTTACTTGGTTTTTCTTCCTAATTTGGTTTTGTTGG ATGGATTACAGTGATACAGATGAGTATTGTTACAGATTCTCCAGTACATTCTTCATCAAGCAGTGATGACTTCATTGCAT ATCTTGATGATGCACTAGATGCGGGTTCACCCAACTCATCCTCCTCTGACGAAGAAGCTGAAAACGGAGACGAGTTTGAG AGTGTTAGGTACTTCTCATTACCTGTTTCATAATAGTTGTAATAAGAGTTGTATCACACATTCACACATATCAGGGTCAT TGTCTAGATACACAGGTCTACTGAAAATTTTGTTTCTTATATAGTGCAATGGTTTATACATGTACTTACTTTATCCCATC TACTTGAACAAGTTTTGTTGTTGCCGGATACTGTGGTTGTTAAGACTCTAGAGTTTATACATTACTAAGTTGCTCACTAG CTACTTTCGAGGGGTTTTAAATTGATTTTCTTTTATCAAGAGTTGACAGTTTTTTATGTATTGGGGTTGATAACTGAGTT TCTGAAAAATCATAAATAATAAACTCAAGGTTTTTATTACATTTAGGGCATTGGTTTTACTATGGCTAGAGCCTAGAGGT ATGAAATGATGATCCGAACAAGTGATCATTACGATATCCTTCTTTCCCCATAAACTATGTTATATAAGAAATGTTGCTAA TAGTAACGCCTTTTCTTCATAGCTACTCATATTATAGGCCTTACCTGTGTTTTATTTTCAGTATCTTTAGTGTTGTTTGA AAACCTATTTTTCTGGTTTGTGGAACTTTGAACCAATTAGCATTGACCTGACTGAAAGACTGTCTGTGTCTTTGGTCTCT TAAGAGAGATGATATTGTAATGGTTTGATTTTTTTCTGTTTCATATTTTTTGTCTAATTTGTCTACGTTACAACTTACAC GCATATGAATTAAAGCAGAGTCAAAAGACAAAAAGTTGAAATCACTGAGGAAATTGAGGGGTCTACATCAGAAGGAACCA TGGGACTGAATTTAGGTAATTTTGATTGTTTTAATTTTTTTTCATTATCTTTACTGGGAACTAGAATCCTTTATATCACA TGTGTAGCAGGGTGTAATTTTCAAGAACTTATTCATACACGGCTTCATGTTTAGAGCTAAAAACCTGTTTTCAAGTTTCA ACCAGTCCAGCCTAGACTTGCATTGCTATATGTAATTTGCTTTACTAAACCATTTTTTTCCACTTCATCGAGAAACAGTA TTGATTGTTTATCTACTGATGGTGGCATTTCTTATAAGTACATGGATAAAAAGATTTCTTTTATGGGTAACTGGATAGCT ACTAGACCTATCTGAAATTTATTTGTAATGGCGCAGACTCTGCATACCAATTTCCCATGTTTGTGCATTTATGATTAATT TGTTTCAGGTTTTATCATTTTTCGTGAAAGTGTTGTAACTTTCTCTTTCGTCTTGTTGTAGAGGCCTCTGTGGAGGGTGA ATGTACACATCCTGGATCATTTGGAGATATGTGTATACGTTGTGGGCAAAAGTTGGATGGGGAATCTGGTACTACATTTG GATACATACATAAGGTATGCATTTTTTTCAGAAATGCATATTGTAGAATTTCAAACTTAGCTTGGGATAGCTGTCCCTGC TGCGCCTCAGTGTTTTCACATATTTTTAAAACCAACTTGAACTGAATGGTTAAAGTGTTATTGATCATGTTCAAGACCAA AAAGTGTAGTGGTGAGCCTGTATAGCACAACTCATTCAGGATATGTTTCTTTCTATTGGAAGTAATTGTTACTGTAAGGA GTAAAATATGTTGTTTTTGGGCATTCACAGATGAATGGTTTAGCTGCTTTGCACACTTTGCACAGTTTGATGATGCTATT TTGGTTTTGTATATGTTACAACATATCCTCTAGTATTTGTTATAGAAATCATATATTCATTTTATGACTTGGTTAGCATG ATGGTTGGGTGGGTTCACATGACCTCTTTATGTATTATAGCCAAACAATAATTGATAGTTTATTAAATGTGGTGGTTTTT TTTTTGATAGGCATTAAATGTGGTGGATAATATTTTATTGCAGGGACTGAGACTTCATGATGAGGAAATTTCTAGATTAC GCAATACAGACGTGAAGAATCTGTTGTGTCGAAAAAAGCTTTACTTGGTTCTTGACCTAGATCACACATTGCTTAACTCC ACTCACCTTGCTCATTTGAGCTCTGAAGAGGTGCATTTACTTACCCAGGCAGATTCTCTAGGAGGTACATCTCAACCATT GTTCTTTTGCTTTTGGTAATTAGCATCTGTATTTTAAATGAGCAGTTTTGCTCAGTTAGTTTTTTTTTCCATCTTTGTTT TTCCTCATATATCAATTAATCTATTATTTCAGAGCAACTTTATCCTACTATTATACAATGAAAGGCCCTGGAATTAGCAT AAATCCTAGATGTATGCTTTAGTGCTACAGTGTTGTGATGATTATCTGTTGGCAAAACATTGGCATTATATTACTCTCTT GGTTTACTAATTTCTAAAGTCAATGTAGCAAAAGTGTGGTGGAGGAATGAGAGTGAGTCTATTCTGCTAACCATGCACTT GTATTCATTGAATGCATTCTGAAAGTTTCTAATAGGTACCCAAAGTTAATTGGTAGTTGAGTTAGTTGATAATAATTCTG TTAGTTTTAGGGTGTCAGTTAGAGCGTGAGAGAGAATGTTATAAATAAGAGTTAGCAAGAAATATTATCTTTGCGGAATT GTTTACATTAAGAATAGGGAGACCTCCTCGTCTCTCAAAACACAAGGAGACTTGAGTGTAATTATGCGTTTATTCCTGAT TCCAGGTATTACTCCATCTTGGACAGGGTTTGGGAGTTAGGGATTCATCAATAAAATTCTATTTTTCTTCATTTTTGACC TGGTTCTTATCAGTTTCCAACAGGTCTTGTGGTGTGTGATTTGTTTTGAAAAATTGTTCAATAAGGATTTTTGTTATTCT GTGGATGCTAAAAGACAAAAATATCCTGGTGTTATTTTACATTTGCTAGGACCATGTTGCAACTTGCAAGTCATTGTCGC ATCACTGCATCATCATATAGAACAACATTTCATATATATATGAGATAGAGTCATGCTGTCCTATGAGTGAGGACTCTTCA TTAATGAGAGTTCATTGAATGAATTTGTATGCTAAACTTAAATTCTTGCATTTTGTTAGATTTAGGGCTTTTCAGACTTG CTACAACCTTTTCTTGATTTTTGATGTTCCGGGTTTTAATTGGCTTATTACATATGCTGCCTTTCTGAACTTCGATACAA TGAAACTATAGATGTCTCTAATGGTAGTCTCTTCAAATTGGAGCATATGCATATGATGACCAAGTTGAGGCCTTCTGTTC GGACATTTCTAAAAGAAGCAAATGAAATGTTTGAGATGTACATATACACCATGGGTGATCGGCCCTACGCTCTAGAGATG GCTAAGCTGCTTGATCCTCGAGGAGAATACTTCAATGCGAAGGTGATTTCTCGAGATGATGGGACTCAAAAGCATCAGAA GGGTCTTGATGTTTTGCTGGGGCAAGAAAGTGCGGTTCTTATTCTCGATGACACGGAACATGTGAGTGCATTGCTAATTT CTGACTTGTTACGTTAAATCACGTAATTGGAATGTTGTTTGATGGTAGTTATTTAATATGAAAGTTAGTCCTACAATATT TTTACATATATATGAACATAATTAGCTTATATGTCTTAAGGTCAATTCCTTTTTATACATAATTAATTTATTTCTAGGGG AAGAAATATAGTCTTTCACTGGTTAGTGACATCGAAAGCCATTCAGTCTTTCATCATCAATTAAAGCAGTCTGATAGGAC TTACAGCTTCGGATTACTTCTAACTGAAAATGTTTCAATTTGAGTGAAAAAATGAAATACAGTTTTGTATATTTGAATTA AAGTAACTACTCTATAATTTTTTATGCTGGAGACATGCATAAGAAGTATTAAATTATGTTTCTTTGCATTTGCATTAGGA TTTCTCAGGAATTAAGCGTGCTAAAACTGTTATCTGCCCTAGTTTTTTATTAAAAAGAGGAGTGTGGCCATACCACCTTT CTGGCTCTAAGGGTCTTTTGGAAACCATTTAACGACGTTGTCTACATCAATATGTTAGTCCATGATAAACTTTTTCTTTG TTTGTATTTTTCTAAAACAATAGTTTCTTATGAGTTGTATCCAGTTACTGGTGTCTACAATGATATTGAATCTAATCATT GTAGAAAGTTCATTCTGTATAGCGAGCTCGGTATTTGGGAGTTTATTGACTAAAATCACTCCTTTTAATGGTTATGTATG AAAATTTGCTTCCAAATGTTGTAGGTATGGATGGAGCATAAAGATAATCTGATACTGATGGAAAGATACCATTTTTTTGG TTCAAGTTGTCGGCAGTTTAATTTAAATTGCAAATCCCTTTCTGAATCGAAGAGTGATGAAGATGAAACTGATGGAGCAC TTGCAAGAGTTCTCAATGTGCTCAAACAAGTCCACTGCACATTCTTTGACGTATGCCACTTTCTCATTATCTCATCCTAA GTTGGTTATTTCTGACATAACACTAAATTTGTGGTGGTGGGGTTCTTTTTGTAGAAACTTGAAGAAGATCTTGTTGATCG AGATGTAAGGAAGGTAGTTATGATTAACTCAAGCTTTTATAATCTTGATGTGAGATTCTATTAATGTAGCTCTTACAATC AAGTCTATTTTTTCCAGGTTTTGTCATCAGTTCGAAGTGAAGTCTTAAGCGGATGTGTGATCGTTTTCAGCCGAATTTTG CATTCAGCATTACCTGCTCTCAAGAAGATGGCAGAGCGGATGGGAGCTACTTGTTTGACAGAGCTTGACCCCTCTGTGAC ACATGTAGTTGCTACCGATGCTGGAACTGAGAAGTCCCGGTGGGCAGTGAAAGAAAAGAAGTTTTTGGTTCATCCTAGAT GGATAGAAGCTGCAAATTATTTTTGGCAAAAGCAGCCTGAAGAGAACTTCGTTGTTAAAAAAATGCAGTAGTCACTTATC AAACATTGCTCTGCTTATAGTTTTTGTTTACAGTTTACATGTTTTAGTGGTCATCTGATTGTGAACAGTCATCAGCAATT CAGTAGAAAATACTAACAGAAACGTTAGCTTTTGGACTAATTCCTTCTAGGCATGCTTTGTTTGAATTATATTCTACATC CCTCCTGCAATTTTTTTTTAAATGGATCATCTTAAAATGAGATTAAAAAT
CDS sequence (LotjaGi4g1v0287100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATTGTTACAGATTCTCCAGTACATTCTTCATCAAGCAGTGATGACTTCATTGCATATCTTGATGATGCACTAGA TGCGGGTTCACCCAACTCATCCTCCTCTGACGAAGAAGCTGAAAACGGAGACGAGTTTGAGAGTGTTAGAGTCAAAAGAC AAAAAGTTGAAATCACTGAGGAAATTGAGGGGTCTACATCAGAAGGAACCATGGGACTGAATTTAGAGGCCTCTGTGGAG GGTGAATGTACACATCCTGGATCATTTGGAGATATGTGTATACGTTGTGGGCAAAAGTTGGATGGGGAATCTGGTACTAC ATTTGGATACATACATAAGGGACTGAGACTTCATGATGAGGAAATTTCTAGATTACGCAATACAGACGTGAAGAATCTGT TGTGTCGAAAAAAGCTTTACTTGGTTCTTGACCTAGATCACACATTGCTTAACTCCACTCACCTTGCTCATTTGAGCTCT GAAGAGGTGCATTTACTTACCCAGGCAGATTCTCTAGGAGATGTCTCTAATGGTAGTCTCTTCAAATTGGAGCATATGCA TATGATGACCAAGTTGAGGCCTTCTGTTCGGACATTTCTAAAAGAAGCAAATGAAATGTTTGAGATGTACATATACACCA TGGGTGATCGGCCCTACGCTCTAGAGATGGCTAAGCTGCTTGATCCTCGAGGAGAATACTTCAATGCGAAGGTGATTTCT CGAGATGATGGGACTCAAAAGCATCAGAAGGGTCTTGATGTTTTGCTGGGGCAAGAAAGTGCGGTTCTTATTCTCGATGA CACGGAACATGTATGGATGGAGCATAAAGATAATCTGATACTGATGGAAAGATACCATTTTTTTGGTTCAAGTTGTCGGC AGTTTAATTTAAATTGCAAATCCCTTTCTGAATCGAAGAGTGATGAAGATGAAACTGATGGAGCACTTGCAAGAGTTCTC AATGTGCTCAAACAAGTCCACTGCACATTCTTTGACAAACTTGAAGAAGATCTTGTTGATCGAGATGTAAGGAAGGTTTT GTCATCAGTTCGAAGTGAAGTCTTAAGCGGATGTGTGATCGTTTTCAGCCGAATTTTGCATTCAGCATTACCTGCTCTCA AGAAGATGGCAGAGCGGATGGGAGCTACTTGTTTGACAGAGCTTGACCCCTCTGTGACACATGTAGTTGCTACCGATGCT GGAACTGAGAAGTCCCGGTGGGCAGTGAAAGAAAAGAAGTTTTTGGTTCATCCTAGATGGATAGAAGCTGCAAATTATTT TTGGCAAAAGCAGCCTGAAGAGAACTTCGTTGTTAAAAAAATGCAGTAG
Protein sequence (LotjaGi4g1v0287100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIVTDSPVHSSSSSDDFIAYLDDALDAGSPNSSSSDEEAENGDEFESVRVKRQKVEITEEIEGSTSEGTMGLNLEASVE GECTHPGSFGDMCIRCGQKLDGESGTTFGYIHKGLRLHDEEISRLRNTDVKNLLCRKKLYLVLDLDHTLLNSTHLAHLSS EEVHLLTQADSLGDVSNGSLFKLEHMHMMTKLRPSVRTFLKEANEMFEMYIYTMGDRPYALEMAKLLDPRGEYFNAKVIS RDDGTQKHQKGLDVLLGQESAVLILDDTEHVWMEHKDNLILMERYHFFGSSCRQFNLNCKSLSESKSDEDETDGALARVL NVLKQVHCTFFDKLEEDLVDRDVRKVLSSVRSEVLSGCVIVFSRILHSALPALKKMAERMGATCLTELDPSVTHVVATDA GTEKSRWAVKEKKFLVHPRWIEAANYFWQKQPEENFVVKKMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 22 | 53 | 32 | - | – | |
| PANTHER | 36 | 440 | 405 | 2.9E-154 | ||
| PANTHER | 36 | 440 | 405 | 2.9E-154 | – | |
| Gene3D | 121 | 349 | 229 | 6.9E-50 | ||
| SUPERFAMILY | 130 | 308 | 179 | 1.59E-33 | ||
| TIGRFAM | 134 | 288 | 155 | 5.9E-54 | ||
| ProSiteProfiles | 134 | 306 | 173 | 29.935 | ||
| SMART | 137 | 292 | 156 | 3.1E-51 | ||
| CDD | 138 | 282 | 145 | 1.82294E-33 | – | |
| Pfam | 140 | 288 | 149 | 1.1E-24 | ||
| CDD | 342 | 433 | 92 | 5.93214E-33 | – | |
| ProSiteProfiles | 350 | 438 | 89 | 11.698 | ||
| Gene3D | 350 | 440 | 91 | 1.4E-20 | ||
| Pfam | 352 | 422 | 71 | 3.5E-8 | ||
| SMART | 352 | 428 | 77 | 2.2E-8 | ||
| SUPERFAMILY | 354 | 439 | 86 | 1.6E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoprotein phosphatase activity | Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. | ||
| Biological process | Dephosphorylation of RNA polymerase II C-terminal domain | The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. |
Expression pattern of LotjaGi4g1v0287100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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