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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287100 |
| Transcript ID | LotjaGi4g1v0287100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II C-terminal domain phosphatase-like protein; TAIR: AT5G58003.1 C-terminal domain phosphatase-like 4; Swiss-Prot: sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4; TrEMBL-Plants: tr|A0A0L9TRV4|A0A0L9TRV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0287100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65942641..65946510) extracted from Lotus japonicus Gifu genome v1.2.
TTACTAAACCATTTTTTTCCACTTCATCGAGAAACAGTATTGATTGTTTATCTACTGATGGTGGCATTTCTTATAAGTAC ATGGATAAAAAGATTTCTTTTATGGGTAACTGGATAGCTACTAGACCTATCTGAAATTTATTTGTAATGGCGCAGACTCT GCATACCAATTTCCCATGTTTGTGCATTTATGATTAATTTGTTTCAGGTTTTATCATTTTTCGTGAAAGTGTTGTAACTT TCTCTTTCGTCTTGTTGTAGAGGCCTCTGTGGAGGGTGAATGTACACATCCTGGATCATTTGGAGATATGTGTATACGTT GTGGGCAAAAGTTGGATGGGGAATCTGGTACTACATTTGGATACATACATAAGGTATGCATTTTTTTCAGAAATGCATAT TGTAGAATTTCAAACTTAGCTTGGGATAGCTGTCCCTGCTGCGCCTCAGTGTTTTCACATATTTTTAAAACCAACTTGAA CTGAATGGTTAAAGTGTTATTGATCATGTTCAAGACCAAAAAGTGTAGTGGTGAGCCTGTATAGCACAACTCATTCAGGA TATGTTTCTTTCTATTGGAAGTAATTGTTACTGTAAGGAGTAAAATATGTTGTTTTTGGGCATTCACAGATGAATGGTTT AGCTGCTTTGCACACTTTGCACAGTTTGATGATGCTATTTTGGTTTTGTATATGTTACAACATATCCTCTAGTATTTGTT ATAGAAATCATATATTCATTTTATGACTTGGTTAGCATGATGGTTGGGTGGGTTCACATGACCTCTTTATGTATTATAGC CAAACAATAATTGATAGTTTATTAAATGTGGTGGTTTTTTTTTTGATAGGCATTAAATGTGGTGGATAATATTTTATTGC AGGGACTGAGACTTCATGATGAGGAAATTTCTAGATTACGCAATACAGACGTGAAGAATCTGTTGTGTCGAAAAAAGCTT TACTTGGTTCTTGACCTAGATCACACATTGCTTAACTCCACTCACCTTGCTCATTTGAGCTCTGAAGAGGTGCATTTACT TACCCAGGCAGATTCTCTAGGAGGTACATCTCAACCATTGTTCTTTTGCTTTTGGTAATTAGCATCTGTATTTTAAATGA GCAGTTTTGCTCAGTTAGTTTTTTTTTCCATCTTTGTTTTTCCTCATATATCAATTAATCTATTATTTCAGAGCAACTTT ATCCTACTATTATACAATGAAAGGCCCTGGAATTAGCATAAATCCTAGATGTATGCTTTAGTGCTACAGTGTTGTGATGA TTATCTGTTGGCAAAACATTGGCATTATATTACTCTCTTGGTTTACTAATTTCTAAAGTCAATGTAGCAAAAGTGTGGTG GAGGAATGAGAGTGAGTCTATTCTGCTAACCATGCACTTGTATTCATTGAATGCATTCTGAAAGTTTCTAATAGGTACCC AAAGTTAATTGGTAGTTGAGTTAGTTGATAATAATTCTGTTAGTTTTAGGGTGTCAGTTAGAGCGTGAGAGAGAATGTTA TAAATAAGAGTTAGCAAGAAATATTATCTTTGCGGAATTGTTTACATTAAGAATAGGGAGACCTCCTCGTCTCTCAAAAC ACAAGGAGACTTGAGTGTAATTATGCGTTTATTCCTGATTCCAGGTATTACTCCATCTTGGACAGGGTTTGGGAGTTAGG GATTCATCAATAAAATTCTATTTTTCTTCATTTTTGACCTGGTTCTTATCAGTTTCCAACAGGTCTTGTGGTGTGTGATT TGTTTTGAAAAATTGTTCAATAAGGATTTTTGTTATTCTGTGGATGCTAAAAGACAAAAATATCCTGGTGTTATTTTACA TTTGCTAGGACCATGTTGCAACTTGCAAGTCATTGTCGCATCACTGCATCATCATATAGAACAACATTTCATATATATAT GAGATAGAGTCATGCTGTCCTATGAGTGAGGACTCTTCATTAATGAGAGTTCATTGAATGAATTTGTATGCTAAACTTAA ATTCTTGCATTTTGTTAGATTTAGGGCTTTTCAGACTTGCTACAACCTTTTCTTGATTTTTGATGTTCCGGGTTTTAATT GGCTTATTACATATGCTGCCTTTCTGAACTTCGATACAATGAAACTATAGATGTCTCTAATGGTAGTCTCTTCAAATTGG AGCATATGCATATGATGACCAAGTTGAGGCCTTCTGTTCGGACATTTCTAAAAGAAGCAAATGAAATGTTTGAGATGTAC ATATACACCATGGGTGATCGGCCCTACGCTCTAGAGATGGCTAAGCTGCTTGATCCTCGAGGAGAATACTTCAATGCGAA GGTGATTTCTCGAGATGATGGGACTCAAAAGCATCAGAAGGGTCTTGATGTTTTGCTGGGGCAAGAAAGTGCGGTTCTTA TTCTCGATGACACGGAACATGTGAGTGCATTGCTAATTTCTGACTTGTTACGTTAAATCACGTAATTGGAATGTTGTTTG ATGGTAGTTATTTAATATGAAAGTTAGTCCTACAATATTTTTACATATATATGAACATAATTAGCTTATATGTCTTAAGG TCAATTCCTTTTTATACATAATTAATTTATTTCTAGGGGAAGAAATATAGTCTTTCACTGGTTAGTGACATCGAAAGCCA TTCAGTCTTTCATCATCAATTAAAGCAGTCTGATAGGACTTACAGCTTCGGATTACTTCTAACTGAAAATGTTTCAATTT GAGTGAAAAAATGAAATACAGTTTTGTATATTTGAATTAAAGTAACTACTCTATAATTTTTTATGCTGGAGACATGCATA AGAAGTATTAAATTATGTTTCTTTGCATTTGCATTAGGATTTCTCAGGAATTAAGCGTGCTAAAACTGTTATCTGCCCTA GTTTTTTATTAAAAAGAGGAGTGTGGCCATACCACCTTTCTGGCTCTAAGGGTCTTTTGGAAACCATTTAACGACGTTGT CTACATCAATATGTTAGTCCATGATAAACTTTTTCTTTGTTTGTATTTTTCTAAAACAATAGTTTCTTATGAGTTGTATC CAGTTACTGGTGTCTACAATGATATTGAATCTAATCATTGTAGAAAGTTCATTCTGTATAGCGAGCTCGGTATTTGGGAG TTTATTGACTAAAATCACTCCTTTTAATGGTTATGTATGAAAATTTGCTTCCAAATGTTGTAGGTATGGATGGAGCATAA AGATAATCTGATACTGATGGAAAGATACCATTTTTTTGGTTCAAGTTGTCGGCAGTTTAATTTAAATTGCAAATCCCTTT CTGAATCGAAGAGTGATGAAGATGAAACTGATGGAGCACTTGCAAGAGTTCTCAATGTGCTCAAACAAGTCCACTGCACA TTCTTTGACGTATGCCACTTTCTCATTATCTCATCCTAAGTTGGTTATTTCTGACATAACACTAAATTTGTGGTGGTGGG GTTCTTTTTGTAGAAACTTGAAGAAGATCTTGTTGATCGAGATGTAAGGAAGGTAGTTATGATTAACTCAAGCTTTTATA ATCTTGATGTGAGATTCTATTAATGTAGCTCTTACAATCAAGTCTATTTTTTCCAGGTTTTGTCATCAGTTCGAAGTGAA GTCTTAAGCGGATGTGTGATCGTTTTCAGCCGAATTTTGCATTCAGCATTACCTGCTCTCAAGAAGATGGCAGAGCGGAT GGGAGCTACTTGTTTGACAGAGCTTGACCCCTCTGTGACACATGTAGTTGCTACCGATGCTGGAACTGAGAAGTCCCGGT GGGCAGTGAAAGAAAAGAAGTTTTTGGTTCATCCTAGATGGATAGAAGCTGCAAATTATTTTTGGCAAAAGCAGCCTGAA GAGAACTTCGTTGTTAAAAAAATGCAGTAG
CDS sequence (LotjaGi4g1v0287100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTATACGTTGTGGGCAAAAGTTGGATGGGGAATCTGGTACTACATTTGGATACATACATAAGGGACTGAGACTTCA TGATGAGGAAATTTCTAGATTACGCAATACAGACGTGAAGAATCTGTTGTGTCGAAAAAAGCTTTACTTGGTTCTTGACC TAGATCACACATTGCTTAACTCCACTCACCTTGCTCATTTGAGCTCTGAAGAGGTGCATTTACTTACCCAGGCAGATTCT CTAGGAGATGTCTCTAATGGTAGTCTCTTCAAATTGGAGCATATGCATATGATGACCAAGTTGAGGCCTTCTGTTCGGAC ATTTCTAAAAGAAGCAAATGAAATGTTTGAGATGTACATATACACCATGGGTGATCGGCCCTACGCTCTAGAGATGGCTA AGCTGCTTGATCCTCGAGGAGAATACTTCAATGCGAAGGTGATTTCTCGAGATGATGGGACTCAAAAGCATCAGAAGGGT CTTGATGTTTTGCTGGGGCAAGAAAGTGCGGTTCTTATTCTCGATGACACGGAACATGTATGGATGGAGCATAAAGATAA TCTGATACTGATGGAAAGATACCATTTTTTTGGTTCAAGTTGTCGGCAGTTTAATTTAAATTGCAAATCCCTTTCTGAAT CGAAGAGTGATGAAGATGAAACTGATGGAGCACTTGCAAGAGTTCTCAATGTGCTCAAACAAGTCCACTGCACATTCTTT GACAAACTTGAAGAAGATCTTGTTGATCGAGATGTAAGGAAGGTTTTGTCATCAGTTCGAAGTGAAGTCTTAAGCGGATG TGTGATCGTTTTCAGCCGAATTTTGCATTCAGCATTACCTGCTCTCAAGAAGATGGCAGAGCGGATGGGAGCTACTTGTT TGACAGAGCTTGACCCCTCTGTGACACATGTAGTTGCTACCGATGCTGGAACTGAGAAGTCCCGGTGGGCAGTGAAAGAA AAGAAGTTTTTGGTTCATCCTAGATGGATAGAAGCTGCAAATTATTTTTGGCAAAAGCAGCCTGAAGAGAACTTCGTTGT TAAAAAAATGCAGTAG
Protein sequence (LotjaGi4g1v0287100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCIRCGQKLDGESGTTFGYIHKGLRLHDEEISRLRNTDVKNLLCRKKLYLVLDLDHTLLNSTHLAHLSSEEVHLLTQADS LGDVSNGSLFKLEHMHMMTKLRPSVRTFLKEANEMFEMYIYTMGDRPYALEMAKLLDPRGEYFNAKVISRDDGTQKHQKG LDVLLGQESAVLILDDTEHVWMEHKDNLILMERYHFFGSSCRQFNLNCKSLSESKSDEDETDGALARVLNVLKQVHCTFF DKLEEDLVDRDVRKVLSSVRSEVLSGCVIVFSRILHSALPALKKMAERMGATCLTELDPSVTHVVATDAGTEKSRWAVKE KKFLVHPRWIEAANYFWQKQPEENFVVKKMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 1.5E-146 | ||
| PANTHER | 1 | 349 | 349 | 1.5E-146 | – | |
| Gene3D | 30 | 258 | 229 | 3.7E-50 | ||
| SUPERFAMILY | 39 | 217 | 179 | 8.58E-34 | ||
| TIGRFAM | 43 | 197 | 155 | 3.5E-54 | ||
| ProSiteProfiles | 43 | 215 | 173 | 29.935 | ||
| SMART | 46 | 201 | 156 | 3.1E-51 | ||
| CDD | 47 | 191 | 145 | 2.16879E-33 | – | |
| Pfam | 49 | 197 | 149 | 6.7E-25 | ||
| CDD | 251 | 342 | 92 | 5.19732E-33 | – | |
| ProSiteProfiles | 259 | 347 | 89 | 11.698 | ||
| Gene3D | 259 | 349 | 91 | 9.4E-21 | ||
| SMART | 261 | 337 | 77 | 2.2E-8 | ||
| Pfam | 261 | 331 | 71 | 2.4E-8 | ||
| SUPERFAMILY | 263 | 348 | 86 | 1.03E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoprotein phosphatase activity | Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. | ||
| Biological process | Dephosphorylation of RNA polymerase II C-terminal domain | The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. |
Expression pattern of LotjaGi4g1v0287100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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