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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036987
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.369s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0004400.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 804738 813954 +
2 domain predictions
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LotjaGi1g1v0004400.2
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1JJU5|I1JJU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004400 LjG1.1_chr1 806178 813954 +
2 domain predictions
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LotjaGi1g1v0633100.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633100 LjG1.1_chr1 118724052 118732969 -
2 domain predictions
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LotjaGi1g1v0655200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121468708 121473568 -
2 domain predictions
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LotjaGi1g1v0655200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
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LotjaGi1g1v0655200.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|K7KEJ7|K7KEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655200 LjG1.1_chr1 121470703 121472793 -
2 domain predictions
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LotjaGi2g1v0014000.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G13460.1 SU(VAR)3-9 homolog 9; Swiss-Prot: sp|Q9T0G7|SUVH9_ARATH Histone-lysine N-methyltransferase family member SUVH9; TrEMBL-Plants: tr|I1KKL7|I1KKL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0014000 LjG1.1_chr2 5118191 5123505 +
2 domain predictions
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LotjaGi2g1v0419200.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91740680 91751300 -
2 domain predictions
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LotjaGi2g1v0419200.2
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419200 LjG1.1_chr2 91743422 91751275 -
2 domain predictions
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LotjaGi2g1v0419400_LC.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TAIR: AT2G22740.1 SU(VAR)3-9 homolog 6; Swiss-Prot: sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419400_LC LjG1.1_chr2 91757175 91760984 -
2 domain predictions
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LotjaGi2g1v0419500_LC.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; TAIR: AT2G35160.1 SU(VAR)3-9 homolog 5; Swiss-Prot: sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5; TrEMBL-Plants: tr|A0A1J7GXF1|A0A1J7GXF1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419500_LC LjG1.1_chr2 91763787 91767174 -
2 domain predictions
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LotjaGi3g1v0102400.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G04940.1 SU(VAR)3-9 homolog 1; Swiss-Prot: sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; TrEMBL-Plants: tr|A0A0B2PC71|A0A0B2PC71_GLYSO Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Found in the gene: LotjaGi3g1v0102400 LjG1.1_chr3 12706709 12711154 -
2 domain predictions
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LotjaGi3g1v0142000.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT2G35160.5 SU(VAR)3-9 homolog 5; Swiss-Prot: sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5; TrEMBL-Plants: tr|V7BLI1|V7BLI1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142000 LjG1.1_chr3 18845367 18849284 +
2 domain predictions
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LotjaGi3g1v0309900.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G73100.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein; Swiss-Prot: sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3; TrEMBL-Plants: tr|I1M0I3|I1M0I3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0309900 LjG1.1_chr3 65689534 65697679 -
2 domain predictions
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LotjaGi4g1v0151300.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G13460.1 SU(VAR)3-9 homolog 9; Swiss-Prot: sp|Q9T0G7|SUVH9_ARATH Histone-lysine N-methyltransferase family member SUVH9; TrEMBL-Plants: tr|A0A072U350|A0A072U350_MEDTR Histone-lysine N-methyltransferase, suvh protein, putative; Found in the gene: LotjaGi4g1v0151300 LjG1.1_chr4 24979158 24988384 +
2 domain predictions
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LotjaGi4g1v0278600.1
n.a. E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 LjG1.1_chr4 64882147 64886907 -
2 domain predictions
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LotjaGi5g1v0349400.1
n.a. Histone-lysine N-methyltransferase, H3 lysine-9 specific; TAIR: AT5G13960.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein; Swiss-Prot: sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4; TrEMBL-Plants: tr|A0A0R0FUI7|A0A0R0FUI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349400 LjG1.1_chr5 66488392 66491484 -
2 domain predictions
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