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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0278600 |
| Transcript ID | LotjaGi4g1v0278600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase orthrus-like protein; TAIR: AT1G57820.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2; TrEMBL-Plants: tr|I1LNN5|I1LNN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0278600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64882147..64886907) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAGTTATCCACCATCAATTATTTCATCAAATTAATTTTATACTTACCTTCAATATTTTTACTATATCTAACAAAT AACTTTTCAACAATGTTCTAGAAGCCTCCTTTTAGACTATATCCAATCTTGTAATGAAGATAAGATAATAAATTTGTAAT GAACAATATTAGGTAGGGTAGTAACTAGTAATTATTGGTGTCAAAAAGTAAAAATCTTTAGAAAGAAAGAAATGAAGAGA AAAAGGTAAGGTAGTATTGACTATTGACTAGTATTGAGTAAGAAAGGTTCACATGAAACGGCACACACCGTATCAGTCCC AACATTTCAAAACCGCTCTTTTTTTGAAAACCCAGTTGTTTTCACTTCACTGGTTCCTAGGTTTGTGTTTTGCCTATATA AACACACCACCAAACACGGTACTAAACACACTCTTCTGTTTCTCTTTCAATTTCTTTCACTCTTCTGTGTTCTTCTTCTT CTGCATTTTCCCCAATTTCAATGGCTGCTCAATTTCCATGTGACCCCCAAGGCGTGTGCATGGTCTGCAAGGTTGTTCCC CCTGACGAGGAGAATCTCACCTGCAACACCTGCGCCACGCCATGGCATGCGCCTTGCCTCTCCTCCTCGCTTCCGGCCAC CGTCGCCGCCACCAATGACTGGCAATGTCCCGATTGCACTAATCTCTTCTCGGCTCCGGTCAAATCGTGCCGGGACGGCC CAGACGGGGAGCTGGTTTCTGCTATCTTATCGGTGAAGGCTGATGAGTCTCTCACGGCGAGTCAGAAGGCTAGGAAATGC CAACAGCTCCTCGCCGGAAAGTCCGCTGCGGTCGAGGATGAGGATGAGGATGAGGATGATGAAGAAGAAGACAAAAAGGA TGACAACAACAACAACAACAACAACAAAATGTCTGTTTCTGATATTCTCACCCGCACTCTCAACTGCTCCATCTGCATTC AGCTTCCTGAGAGGCCTGTCACGGTATAACCCTCATGTCACAGTTCCAATTTTTGTTTTGCTTTCATTATCATTTATGTG ATTGACTTTAGATGACATGTATTCAATGAGTTGGGTCATTTTTCAATTTAGTTTGCATCCAATTTCTAATTTCTGGTTGT TGTTGGGTGGAAAATTGATTGATGATATTGAATTTTGTGTTTGTATTTTGTCCCTATTCCTATGACTGTATACCTACTAT TGCCACTTTATAATTACTGATCATTGTAATGAGGTTATTGAATATGGTAGATGTTATAGTGGTTGATTATGGTAGAATAG ACGTCAGTGCTGTGCTGTAATGATTCATGGGAATTGCAGACTCCTTGTGGACACAGTTTCTGTCTGAAGTGCTTTGAGAA ATGGATTCGGCAAGGGAAAAGAACTTGTGCCAAGTGCAGGCAGAATATCCCTGCGAGCATGGCGAGCCAGCCTCGCATCA ATTCTGCGCTAGTGTTTGCCATTCGTATGGCGAGGGCGTCAAAAGCGAATGGTGGTGCTGGTGCAGGGCCTTCCGGTGTT CGGCATTTCCTGCATAACCAAGATAGGCCAGACCAGGCGTATACTACTGACCGTGCACAGAGGAGTGGCCGAGCAAATGC CTGCAGTGGAAAGATTTTCGTGACTGTGCCGACTGATCATTTTGGTCCAATCCTTCCCCAGAATGACCCTTTGAGGAATC AGGGTCTGCTCGTCGGTGAATCTTGGCTGGATAGACTGGAATGCAGGCAATGGGGTGCTCACTTTGTGCATGTTGGTGGC ATTGCTGGACAATCTGATAGGGGAGCACAGTCTGTTGTGCTTTCTGGAGGATATGTTGATGATCAGGATCATGGAGAATG GTTTCTCTATACTGGAAGGTTGGTTTCTGCGGTCTACTTCCCTTTATTCCTCTTCTCTTTTCTTAACTCTTTCATTTCTT CATGCGCAGCGGTGGTAAAGATCTTACTGGGAATAAGCGCACAAATAAGAACCATTCCTTTGATCAAAAATTTGAGAAGT ACAACCGGGCACTTCAGTTAAGTTGCCTGAAAGGTTATCCAGTTCGAGTTGTCAGGTGTGATAAGCTTAACCATCTACTT GGATTTGCAACTTGTATTCTTTCAAATACTTTATGTGACTTCAGTTTACTAACAAGTACTGTGCTAGAATGATGCATATG CTATTTAAAAGTATAAGCTTGCAGTAGTAAGATCAGAGTTGTAGTGTACTATAAATACCTTGTTAAGGAAGTGCATTGTC GTTTTAGTGACAGAGTTACTTTTGCAATATGCAGCTCTAAATTCTTTACTGGTTCTTTGAGAGTATTCCCATCAAACTCA AGGATGTGTAGAGAAACTTGGTTTCAAACTGCATTTTAGAATTAGGAGAGCTGAACTGCATCCTGTTATTTGGTCTAGAT TCACAACATGAGCTTAGCTTCTGCCCCAATTGGAAAAAAGCAATATGGCTATTATTACTAATTACCTGATCATAGTAACA TAGGTGGTATTAGATTGCAAAAAACTAATGTCATTGAACTTTTAATAGAGATTAAATTTCATTAGATGTCTAATGCACAT GTGTTTGTTAGTGTTATGGCTAAGGTAGCATGTTATTTAACAAAATTGATATTTTGAGTCAATAACCTTGGTATTTTTTT GGTTGGGACTGTGTTAAATTTATTGTTATATGATTGACTTACTCAATTAAGCTGTGATTAAACATCAACGTTTCAATTAG TTCATCAAATGTTTGCTCTAATATTCCAAACTTACATCAATAAGCAGATCTCACAAAGAGAAGCGATCCTCATATGCCCC CGAGAAAGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAATGTTGGCAGATAGCAGGAGTGCAGGTAAATATGTGCA ATTTCAGGATAATTTGATTGCCTCTTTCTTGTTCTAGATTTCATGCAATGCATCTGATGACATTAATTATTCCGTAACTA GGGTTTCAAAGTCTGCCGATTTTTATTTGTTAGATGTGACAATGAACCTGCCCCATGGACAAGGTATTTTTCTTGGTCTT CCTGTTGAGTCAGTTTGACACTAACCCTTTTTGACATTCCATTTACTAAACTATGTGGAAACACAGTGATGATCACGGGG ACAGACCAAGGCCTTTACCAGCTGTCCGTGAGCTGAATAAGGCCACAGGCATACACGAAAGAACAGAAGCACCTGCTTGG GATTTTGATGTGAGTCATTGTTGAAAGGGTTCTTTTTCTTTTTTAAAATTTCTCTGCAAGTTTTAAAACAATTTCATTTT TTCTCAGCAACGTGCACATGATTATACTGTCTGAAATATAGATCATATAATTACAACATTTAAAATACATTTAATTTAAT GAGTAATTAATATTTAGGAGGCGAATTCTTGCTGGAAATGGATGAAACCACCCCCTCCGAGTAGGAAAAAGATACAAACC GAGGAACCCACACCCACACAAATAGCTATATCAGCTAAAGAGGCTAAAAGGTTCCAATACATGTCGATCAAGGAACAATT GCGTAAAGGTATGTTACCCTTTACAATTTTTGACATAGCTTCAGTCTGGGTTAAAAGGTTAATGTTGTTAGCCATATCCA TTAATACAATCTTATTGACTTATGCCCTTTTTCGTTTCTCGCAAATGCAGGGTTCTCGTGCCTCATATGTAGTGAGGTTA TGGTCTCACCAGTGACAACTCCATGTGCTCATAATTTCTGCAAGCCATGCTTAGAGGGTGTATTTGCTGGTAAGTCTTCT GTGAAGGAGAGAAGCAGGGGTGGGAGAACACTTCGGGCCCAGAAAGTTGTGATGAAGTGTCCTGGATGCACTGTTGACAT CTCTGATTATCTTCAGAACCTTCAGGTGTGTAATGTCTTGCTCTTGATATCTGAGATGTTAAGGTTTCCAGCTTAACATT GTGGATTTTAAATTTGTCTGGTTGGGTGGGTGGTTGTTTGACAGGTTGATATAGATTTGAAGGGTGCGATTGAATCACTG AAAGCCAAGGCTGAAGAAAATGGAGAATCACTGGAGTCAAGTGAAGATGCAGATGCTTGCATGGATGAAGATACTGGCTC AGTGAAAGAAAACTCCGGGGAGGAGTTAAGTGGTTCAACTGGGACCAACAAGGCTACTGAAAATGGAGAACCATTGGTCT CAAGTGAAGATGCAGATGCTTGCAAGGATGAAGATACTGGCTCAGTGAAAGAAAACTCTGTGGAGGAGTTAAATGGTTCA ACTGAGAGCAAAAAGGTGCCAGATCAAGCAGTGAAGCGCAATGCAAAGAGAAAGAAAAATGATTCTGGAGAACAATTGGC TGATAAGGGTGATGGTCAAAAGGCTAAAAGAGGTAGAAAATCCAGAAAAGTTGAGAAAGCAGTGAATGAAGCAAATGATT CTCCATCCAGTCCATTAGATCACCAGTAAGGAATTGTAAGGACTGGACCAGATCACCAGTAAGGAATTGTAAGGACTGGA CCATCAGCTGGTTGGATTATGGTCGGGTGGTCTCTTTAATCTGTCTTTTTACTGTTTTGGCTATGTTTTGGGGTCTGTTT ATATTGGTTAGTCAGCTGGTTGGACTATTTTTTTTAAGATGTACACAATTTAAAAGCAAATTTACCTTTCCTAGTGAGAT GGTAATTTTACATCCCAACATCAATGAAGCATTTAGTTCTATACAATCACAGGGCCAAACGATTGAAAAAGACAATCTGA TCTAGAAAGTAGTATTTTATCTTTACCAACTTTGATGAGAC
CDS sequence (LotjaGi4g1v0278600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCAATTTCCATGTGACCCCCAAGGCGTGTGCATGGTCTGCAAGGTTGTTCCCCCTGACGAGGAGAATCTCAC CTGCAACACCTGCGCCACGCCATGGCATGCGCCTTGCCTCTCCTCCTCGCTTCCGGCCACCGTCGCCGCCACCAATGACT GGCAATGTCCCGATTGCACTAATCTCTTCTCGGCTCCGGTCAAATCGTGCCGGGACGGCCCAGACGGGGAGCTGGTTTCT GCTATCTTATCGGTGAAGGCTGATGAGTCTCTCACGGCGAGTCAGAAGGCTAGGAAATGCCAACAGCTCCTCGCCGGAAA GTCCGCTGCGGTCGAGGATGAGGATGAGGATGAGGATGATGAAGAAGAAGACAAAAAGGATGACAACAACAACAACAACA ACAACAAAATGTCTGTTTCTGATATTCTCACCCGCACTCTCAACTGCTCCATCTGCATTCAGCTTCCTGAGAGGCCTGTC ACGACTCCTTGTGGACACAGTTTCTGTCTGAAGTGCTTTGAGAAATGGATTCGGCAAGGGAAAAGAACTTGTGCCAAGTG CAGGCAGAATATCCCTGCGAGCATGGCGAGCCAGCCTCGCATCAATTCTGCGCTAGTGTTTGCCATTCGTATGGCGAGGG CGTCAAAAGCGAATGGTGGTGCTGGTGCAGGGCCTTCCGGTGTTCGGCATTTCCTGCATAACCAAGATAGGCCAGACCAG GCGTATACTACTGACCGTGCACAGAGGAGTGGCCGAGCAAATGCCTGCAGTGGAAAGATTTTCGTGACTGTGCCGACTGA TCATTTTGGTCCAATCCTTCCCCAGAATGACCCTTTGAGGAATCAGGGTCTGCTCGTCGGTGAATCTTGGCTGGATAGAC TGGAATGCAGGCAATGGGGTGCTCACTTTGTGCATGTTGGTGGCATTGCTGGACAATCTGATAGGGGAGCACAGTCTGTT GTGCTTTCTGGAGGATATGTTGATGATCAGGATCATGGAGAATGGTTTCTCTATACTGGAAGCGGTGGTAAAGATCTTAC TGGGAATAAGCGCACAAATAAGAACCATTCCTTTGATCAAAAATTTGAGAAGTACAACCGGGCACTTCAGTTAAGTTGCC TGAAAGGTTATCCAGTTCGAGTTGTCAGATCTCACAAAGAGAAGCGATCCTCATATGCCCCCGAGAAAGGAGTGCGGTAT GATGGAATTTATAGAATTGAAAAATGTTGGCAGATAGCAGGAGTGCAGGGTTTCAAAGTCTGCCGATTTTTATTTGTTAG ATGTGACAATGAACCTGCCCCATGGACAAGTGATGATCACGGGGACAGACCAAGGCCTTTACCAGCTGTCCGTGAGCTGA ATAAGGCCACAGGCATACACGAAAGAACAGAAGCACCTGCTTGGGATTTTGATGAGGCGAATTCTTGCTGGAAATGGATG AAACCACCCCCTCCGAGTAGGAAAAAGATACAAACCGAGGAACCCACACCCACACAAATAGCTATATCAGCTAAAGAGGC TAAAAGGTTCCAATACATGTCGATCAAGGAACAATTGCGTAAAGGGTTCTCGTGCCTCATATGTAGTGAGGTTATGGTCT CACCAGTGACAACTCCATGTGCTCATAATTTCTGCAAGCCATGCTTAGAGGGTGTATTTGCTGGTAAGTCTTCTGTGAAG GAGAGAAGCAGGGGTGGGAGAACACTTCGGGCCCAGAAAGTTGTGATGAAGTGTCCTGGATGCACTGTTGACATCTCTGA TTATCTTCAGAACCTTCAGGTTGATATAGATTTGAAGGGTGCGATTGAATCACTGAAAGCCAAGGCTGAAGAAAATGGAG AATCACTGGAGTCAAGTGAAGATGCAGATGCTTGCATGGATGAAGATACTGGCTCAGTGAAAGAAAACTCCGGGGAGGAG TTAAGTGGTTCAACTGGGACCAACAAGGCTACTGAAAATGGAGAACCATTGGTCTCAAGTGAAGATGCAGATGCTTGCAA GGATGAAGATACTGGCTCAGTGAAAGAAAACTCTGTGGAGGAGTTAAATGGTTCAACTGAGAGCAAAAAGGTGCCAGATC AAGCAGTGAAGCGCAATGCAAAGAGAAAGAAAAATGATTCTGGAGAACAATTGGCTGATAAGGGTGATGGTCAAAAGGCT AAAAGAGGTAGAAAATCCAGAAAAGTTGAGAAAGCAGTGAATGAAGCAAATGATTCTCCATCCAGTCCATTAGATCACCA GTAA
Protein sequence (LotjaGi4g1v0278600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAQFPCDPQGVCMVCKVVPPDEENLTCNTCATPWHAPCLSSSLPATVAATNDWQCPDCTNLFSAPVKSCRDGPDGELVS AILSVKADESLTASQKARKCQQLLAGKSAAVEDEDEDEDDEEEDKKDDNNNNNNNKMSVSDILTRTLNCSICIQLPERPV TTPCGHSFCLKCFEKWIRQGKRTCAKCRQNIPASMASQPRINSALVFAIRMARASKANGGAGAGPSGVRHFLHNQDRPDQ AYTTDRAQRSGRANACSGKIFVTVPTDHFGPILPQNDPLRNQGLLVGESWLDRLECRQWGAHFVHVGGIAGQSDRGAQSV VLSGGYVDDQDHGEWFLYTGSGGKDLTGNKRTNKNHSFDQKFEKYNRALQLSCLKGYPVRVVRSHKEKRSSYAPEKGVRY DGIYRIEKCWQIAGVQGFKVCRFLFVRCDNEPAPWTSDDHGDRPRPLPAVRELNKATGIHERTEAPAWDFDEANSCWKWM KPPPPSRKKIQTEEPTPTQIAISAKEAKRFQYMSIKEQLRKGFSCLICSEVMVSPVTTPCAHNFCKPCLEGVFAGKSSVK ERSRGGRTLRAQKVVMKCPGCTVDISDYLQNLQVDIDLKGAIESLKAKAEENGESLESSEDADACMDEDTGSVKENSGEE LSGSTGTNKATENGEPLVSSEDADACKDEDTGSVKENSVEELNGSTESKKVPDQAVKRNAKRKKNDSGEQLADKGDGQKA KRGRKSRKVEKAVNEANDSPSSPLDHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 678 | 677 | 0.0 | – | |
| PANTHER | 2 | 678 | 677 | 0.0 | – | |
| SUPERFAMILY | 4 | 61 | 58 | 2.02E-8 | ||
| ProSiteProfiles | 10 | 62 | 53 | 9.072 | ||
| Gene3D | 10 | 61 | 52 | 1.7E-6 | ||
| SMART | 12 | 60 | 49 | 6.0E-6 | ||
| ProSitePatterns | 13 | 59 | 47 | - | ||
| SMART | 13 | 59 | 47 | 6.9 | ||
| Gene3D | 106 | 212 | 107 | 2.3E-20 | ||
| MobiDBLite | 107 | 137 | 31 | - | – | |
| MobiDBLite | 111 | 126 | 16 | - | – | |
| SUPERFAMILY | 142 | 195 | 54 | 4.99E-17 | – | |
| Pfam | 149 | 187 | 39 | 1.9E-9 | ||
| CDD | 149 | 187 | 39 | 1.37433E-10 | – | |
| ProSiteProfiles | 149 | 188 | 40 | 12.194 | ||
| SMART | 149 | 187 | 39 | 1.0E-6 | ||
| MobiDBLite | 218 | 250 | 33 | - | – | |
| Gene3D | 250 | 450 | 201 | 2.9E-69 | ||
| SUPERFAMILY | 253 | 448 | 196 | 1.22E-65 | ||
| SMART | 274 | 431 | 158 | 1.4E-69 | ||
| ProSiteProfiles | 279 | 427 | 149 | 47.895 | ||
| Pfam | 282 | 430 | 149 | 9.3E-49 | ||
| Gene3D | 506 | 637 | 132 | 1.5E-15 | ||
| SUPERFAMILY | 517 | 607 | 91 | 1.86E-12 | – | |
| ProSiteProfiles | 525 | 582 | 58 | 10.439 | ||
| Pfam | 525 | 560 | 36 | 1.7E-7 | ||
| SMART | 525 | 581 | 57 | 5.5E-7 | ||
| ProSitePatterns | 540 | 549 | 10 | - | ||
| MobiDBLite | 610 | 747 | 138 | - | – | |
| MobiDBLite | 636 | 655 | 20 | - | – | |
| MobiDBLite | 661 | 720 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0278600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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