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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023201
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.242s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4431080.1
n.a. PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like isoform X1 [Cicer arietinum] gi|502109502|ref|XP_004493661.1| chr1 51583404 51590651 -
3 domain predictions
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Lj4g3v0880270.1
n.a. PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] gi|356543211|ref|XP_003540056.1| chr4 13415848 13419857 +
3 domain predictions
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Lj6g3v1049120.1
n.a. PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Glycine max] gi|356517020|ref|XP_003527188.1| chr6 11928134 11930489 +
3 domain predictions
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Lj6g3v1049120.2
n.a. PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Glycine max] gi|356517020|ref|XP_003527188.1| chr6 11928134 11938812 +
3 domain predictions
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LotjaGi1g1v0728300.1
n.a. Protein translocase secy subunit, putative; TAIR: AT2G31530.1 SecY protein transport family protein; Swiss-Prot: sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic; TrEMBL-Plants: tr|I1JNT8|I1JNT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0728300 LjG1.1_chr1 129996385 130003791 +
3 domain predictions
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LotjaGi1g1v0728300.2
n.a. Protein translocase secy subunit, putative; TAIR: AT2G31530.1 SecY protein transport family protein; Swiss-Prot: sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic; TrEMBL-Plants: tr|A0A0R0EYD4|A0A0R0EYD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0728300 LjG1.1_chr1 129996412 130003617 +
3 domain predictions
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LotjaGi1g1v0728300.3
n.a. Protein translocase secy subunit, putative; TAIR: AT2G31530.1 SecY protein transport family protein; Swiss-Prot: sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic; TrEMBL-Plants: tr|A0A0R0EYD4|A0A0R0EYD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0728300 LjG1.1_chr1 129996444 130003590 +
3 domain predictions
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LotjaGi1g1v0728300.4
n.a. Protein translocase secy subunit, putative; TAIR: AT2G31530.1 SecY protein transport family protein; Swiss-Prot: sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic; TrEMBL-Plants: tr|V7CYE8|V7CYE8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0728300 LjG1.1_chr1 129996558 130002701 +
3 domain predictions
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LotjaGi4g1v0113300.1
n.a. Protein transport protein Sec61 subunit alpha; TAIR: AT2G34250.1 SecY protein transport family protein; Swiss-Prot: sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha; TrEMBL-Plants: tr|A0A1J7HEZ2|A0A1J7HEZ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113300 LjG1.1_chr4 16340466 16345368 +
3 domain predictions
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LotjaGi4g1v0113300.2
n.a. Protein transport protein Sec61 subunit alpha; TAIR: AT2G34250.1 SecY protein transport family protein; Swiss-Prot: sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha; TrEMBL-Plants: tr|A0A1J7HEZ2|A0A1J7HEZ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0113300 LjG1.1_chr4 16341560 16344422 +
3 domain predictions
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LotjaGi6g1v0198400.1
n.a. Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 LjG1.1_chr6 49487347 49498673 -
3 domain predictions
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LotjaGi6g1v0198400.2
n.a. Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 LjG1.1_chr6 49495390 49496438 -
3 domain predictions
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LotjaGi6g1v0198400.3
n.a. Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 LjG1.1_chr6 49495390 49497918 -
3 domain predictions
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LotjaGi6g1v0198400.4
n.a. Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 LjG1.1_chr6 49495390 49498031 -
3 domain predictions
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LotjaGi6g1v0198400.5
n.a. Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 LjG1.1_chr6 49495390 49498153 -
3 domain predictions
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