Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR001566

Source: InterPro

Description

IPR001566 is a 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.

<p>This family represents the RlmD (also known as rumA / ygcA) RNA uridine methyltransferase. In E. coli, methyltransferases are responsible for converting uridine to thymidine in rRNA and tRNAs. Among them, TrmA is responsible for tRNA U54 methylation. RlmD (assigned as YgcA previously) was first identified as a methyltransferase through its homology to the TrmA family. RlmD was then found acting as a methyltransferase on the 23S RNA for the conserved U1939 [[cite:PUB00015406], [cite:PUB00015471]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

Associated Lotus transcripts 1

Transcript Name Description Predicted domains Domain count
Lj3g3v2718810.1
– 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Domains
13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd02440 CDD 1 100.00