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Lj3g3v2718810.1

Overview

Field Value
Gene ID Lj3g3v2718810
Transcript ID Lj3g3v2718810.1
Lotus japonicus genome version MG20 v3.0
Description 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula] gi|357454725|ref|XP_003597643.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11061
1 266 266 6.10E-133 –
PANTHER
PTHR11061:SF30
1 266 266 6.10E-133 –
ProSiteProfiles
PS51687
1 267 267 57.06
IPR010280
SUPERFAMILY
SSF53335
13 263 251 2.05E-54
IPR029063
TIGRFAM
TIGR00479
33 259 227 3.60E-62
IPR001566
Gene3D
G3DSA:3.40.50.150
52 265 214 1.10E-66
IPR029063
Pfam
PF05958
76 265 190 1.00E-17
IPR010280
CDD
cd02440
116 214 99 3.94E-14 –
ProSitePatterns
PS01231
249 259 11 –
IPR030391

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0008173
Molecular function RNA methyltransferase activity Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj3g3v2718810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2718810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.