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Lj2g3v0264020.1

Overview

Field Value
Gene ID Lj2g3v0264020
Transcript ID Lj2g3v0264020.1
Lotus japonicus genome version MG20 v3.0
Description hydroxyproline-rich glycoprotein [Solanum tuberosum] gi|24745591|dbj|BAC23028.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP 1 27 27
SignalP 1 27 27
SignalP 1 27 27
Phobius 1 7 7
Phobius 1 27 27
Phobius 8 19 12
Phobius 20 27 8
Pfam 27 66 40 5.10E-05
Phobius 28 247 220
PRINTS 33 49 17 5.60E-10
PRINTS 54 66 13 5.60E-10
Pfam 54 99 46 4.10E-06
PRINTS 67 88 22 5.60E-10
PRINTS 94 110 17 5.60E-10
Pfam 97 132 36 2.70E-05
MobiDBLite 125 145 21
Pfam 149 188 40 9.50E-07
MobiDBLite 150 169 20
Pfam 178 221 44 4.60E-07
MobiDBLite 220 247 28

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Structural constituent of cell wall The action of a molecule that contributes to the structural integrity of a cell wall.
Biological process Plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v0264020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0264020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.