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IPR013029 is a YchF, C-terminal domain.
<p>This domain is found at the C terminus of YchF. The crystal structure of YchF [swissprot:P44681] from Haemophilus influenzae has been determined [[cite:PUB00016351]]. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an α-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an α-helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| | 22 | ||
| – | PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1| | 23 | ||
| – | PREDICTED: obg-like ATPase 1-like [Glycine max] gi|356555899|ref|XP_003546267.1| | 24 | ||
| – | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 | 24 | ||
| – | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 | 22 | ||
| – | Obg-like ATPase 1; TAIR: AT1G30580.1 GTP binding protein; Swiss-Prot: sp|Q9SA73|OLA1_ARATH Obg-like ATPase 1; TrEMBL-Plants: tr|I3T7Y1|I3T7Y1_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi6g1v0271200 | 27 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd04867 | CDD | 1 | 16.67 |