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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0034900 |
| Transcript ID | LotjaGi3g1v0034900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3707524..3712375) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAGAGTAGCTTGCTATCACCTTCACATGGTTCCCAGTTTCGTTCATCCATTGAAGTCAACACTCTTCAGAAACCA CACTCTTTTCACCATACACTCTCCTCACCGTTATGGGGTTCAGCCAAGGTTCTCTTTCTCTTCTTCTTCATCGTCCAAGA TAAGCATGAGCCTCAGGGCTGGTATCGTTGGTCTCCCCAACGTTGGCAAGTCCACACTCTTCAATGCTGTGGTAAGCCAC TCTCTCTGACTTTGCTTGTGTGTGTAAATTATGTGGGTGTTATTGGTCCCAAATGAGAATGATGTTGTTTTTTTGGCATC TGGGTATTGCTTGAAATGATGGGTCTTTGTTCTATCTGTTCTTCAGCTTTGGAATTGAATGGTTGTTTTTAATTTGCAAA ATTAAACTTTAGTTTTGGTATGCTCTGTGATGCAATGCTTTGATTGTTTCCTTTATGGTTTGAGCTATCCTTGTTTTATA TTGATTTTGAGGGAGTGGTTGTTGTTGCTTCATTGTTTTTGAAACTCTTTGAATGTGCCATGGTTAAAATTTACTTTCAA TTTTGCCCTTAGTTGCTCCTTGGGAATATTTTGAGGGAGTGGTTGTTGTTGCTTCCTTGGTTAAAATTTACTTTCAATTT TGCACTTTCATTGTTTACTCAATTTTTTTTTGAGTTGAAAAAATTGCCATCATACATCACACTCCTAATTATCCTCTCCT TGATACTCTATTGTTTGATTGTAGTCAGGCTATACATAAGAGATCAGGTGTACAACCCATACACCATTTCTCTTAATCAC TCTCTCTTGCAATATGCATTATTGCTTTCATAAGGCTTTTAGCCTTCAACAAAACTCCAGTTCTTGCTGCTAAGTTATAC ACATTGTCATAAACCAATTATCCAAAAGCTGTTGGGTAAAGGACTCATGAATGGTTCTATTATATTTCTAACACGCCCCC TAACACGCCCCCTTACCCCTCACGCAAGAGCCCACTTGGGCTTGATTTGAAGCGTGGACAACGTACAGGCCCACAACTCA CCTACTATGTGCTGAAACTCAACTTTTTATCGGAATAATGGGGGCAACAGGTATCAAACTCTAGTCTAGACCACTTGGTT ATAGAAGCTCTGATATCATGTCATGAACCAATTATCCCAAAAGCTTAAGCTGTTGGGTAAATGAGACATGAATGATCTAT ATTGTATTTCTATCACGCCCCCTCGTGCAAGAGCCCACTTGGGCTTGAAGCATGGACAATGCATAGGCTCACCTACCGTG TGCTGAAATTCAAATTTTTACTAGAATTATGGGGTAATAAGGATCAAATTCTAGGCCCACTTGGTTACAGAAGCCTGATA CCATGTCATGAACCAATTATCCCCAAAGCTTAAGCTGTTGGGTAAAGGATACATGAATGGTTATATTATATTTCTAACAT ACTTAACTCCCATGCATGCTGCCTCTTGAATATTATAGATTTTTAGATTTTTGTCCTTTTTGAGCACATTAAATAGTCCT GTAAACTGACACAAGTCTTGGTGCTTCACGCAATGCTGTTATTTCGTTTACATATTTATTCAGGTGCTATGGTAGATCAC TAAAACTTATGGGCTCGAGTTTAGGTTGCCACATTCATTTATGATAAAATAAAGACAGATTCTTACAGGTGGGCTGAAGT TGAATCTAAACGCATAATGTCTTCCTTATACACCAAGAGGCTTTCTTACTTGTGATGGGGTGACTTGTATTTCGAAACTT ACTGAAACATACTAAAAAGCAGAGTAAATGTTATGAGATTTGAAATTTCTGGTTTTTGTAATGACAATTTATTTGGGTTT GTTGTTTTACGTAATGGATAATCTACCAGAGGCGCAGGATCCATACTTATATTTCCTCTAAGCAATAGTTGTGGAGAAAT ATGAACCTTGCATGACTACTTTTTTTAAAAAAGTCATTGTTAAATTGGCATTATGCTTGGAATACATTTATATGCCTTAA TATAATCAATTGACTAGCAAAATTTTGTGAGGATTTTTTTTATTGTTTAGTTTCTTTAATTTCTGCTAAACTTTTTGGCT GATTGTTGTATTGATGTTTTTTGTGCATATTGCCCTAGTTCCCAATGCTATAATAATATATTGAAATTTAATTGATATTG GTCTTTTATTTCTAGGTTGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTGGGGAT TGTTGCTGTTCCAGATTCTCGTCTCCATGTGCTCTCTGATCTCAGTAAATCTCAGCGAGTGGTTCCAGCGTCCATAGAGT TTGTAGATATAGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGTTTTCATAATTTCTTTTCACCTTCTTTAGTTTGGT TGTCAACACGCACTTTTTTTTATCAATTTATTTATTGTTGTAGAAAATTGCAAATACATTCTTTGATTCCCTATTCTAAC TTCAACTGTTACAGGGTCTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTGTTTCCTTGT CATCATTTTTCTTTCATCATTACTTCTGTTATTTTTGTTCCATGTCTTCCCTTATTATGCACCAAATCAGTAGCTATCTA CATATTGTTAATCAGAACTTGGAGTTCTGAAATTATTGTGCTTAAACGTACAGGGTTGTTTTTACTCCATTATCTGATTT AGTATTGAAATGGATCTATTGATTATACATTAGGTTGTACGATGTTTTGATGACAATGACATTATTCATGTGAATGGGAA AGTTGACCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTCTGTGACTTGGACCAGGTCAGGTTACTAACTT CCATGCTACACAAGTTTACTGCCTTTGTTTCCTTTGAATATGTTATTATTGTTCCAAATGGAATTGGCGACACATTAATG AGTTCAATCATATTTATTGTGCTAATTTGGATGGAGTAATTGTATTTTTTCCTTTCTTTTTACTGTGACCAATGCCTTCA AGTTTTTTGCAGTCTATCTGTTTATGCGCAAAACTTGCTATGTATTTCTATGACAAAATCGCTCGATAGAACTAAGATTT TCCTCTTTCCTAGAAATGCAGATTGAGAAAAGACTGGATAAACTAAAGAAGGGCAAGCCGAAGGATTCACAAAGAGTCAA GGTTATATTCTTTAAATATTTCCACCTTTCATTGGTCTTTGTTTTTATTAGTTAGAATACATCATTCCGCTTGATTTTGA AATTCTTGATTTTAGGAAGAGGCAGAAAAGTCTGCACTGGAGAAGATTCGCGTGGCACTCTTGGATGGAAAACCTGCACG ATCTGTGACCTTAACTGATTCTGAAAGGGATGCTGTGAAGCACCTCTGCTTGCTCACAATGAAACCCATTATATATGTGG CAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAAAAATAATTATGTCAATGATGTCACCAATGTTGCATCTGAGCTG CAGTCAGGAATCGTAACAGTTTCAGCACAGGTATATATATATACACACTTTGTTTGGATATGAAAAAAGAATGGTGAAAG AAAGTAGGTAGAAATAAATTGGAAAGAAGAGAAATTGGGGCGGGTTTTTTCTCTGGGATGGAGAGAAAGAAAGGCTAAGA ACCTATTTAGTTTTCATTTCCATTTTTTATCTTCATTTCCTGTTTTCAGTTTTAATTACAAAAATGCTACATTATTTTGA GGTAGTTTTTTGTTATCAAAATCTTGTACAGCAAACAATGAAAAGAACATTTTACGATTTTCATTGTTTCCTATGCAAAA CTTTAAAATAGGATACAAACAAAAAACAAGCTGACATTTTTGTAGTTAAAACTGAAAATTGGGATTGGAAATTGAAACCT TTTTCTTAAACCAAACAGGACCTAAAGTAAGATTATAATCTCTCTATACTGAAAGAACAATTATTGACATTCTTGTTATT GTGTCCATGGAGAGTCATGTAAGATGGGTTAACGTGTCCTTGCAGGTTGAGGCAGAGCTAACTGAACTAGCTACGGAAGA AAGAAAAGAATATCTGAACTCTCTTGGTGTTAGTGAAAGTGGTCTTGGTAACCTAATCAGGGCAACCTATAGCCTTTTGG GGCTGCGAACTTATTTTACGTCTGGTGAGAAGGTAAGAGGAAAAGCTTGAAAAGTTTTAGCGAGCGTTGCAGTTTGGCAT ATCCTGTAAAGCATATATGCACCGGTAAATTAGTAGCTTGCAGCACTTGATTCATTATTCAGAACTGATTTGTTTTCGTA ATATGAACTCAGGAAACAAAAGCATGGACGATACTTGCAGGTTAGCTTACTCTCTGGATGAGACTTACTCATTGCACAAT ACTTTGACTGGATTTCATCCTTTTCTGAGAACCATGTTCATTTAATTTGACAAATCCTAGCTATTAATTTGACAAATAAT AGCTATTAAAATGTTGCCAGTCTTATCTTTGGACATGCAATGTAGAGATATATTTTTCCTATTGTTGACAAATGCCTGTG TTTAGATTATCTTATGCTCCTTTATTTTGTTATGGAGTAAGTAACCTGAGTGATTGACCAAACTGAATTATGAATAATAT AAAGATTAAAGTTAGATTGGATTACTCTTCTAAATTTTAAATCTTCTGTTGTCTAGGAATGACGGCACCTCAAGCTGCTG GAGTGATTCACTCTGACTTCGAGAAGGGTTTCATTCGAGCAGAGACAGTAAGCATCAAGGATATAATTTTGAACTCCTGT TTATATATATGACAGCATATCAGTGTTGTCAAATAGCGGCGCTATAGCGTAG
CDS sequence (LotjaGi3g1v0034900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAGTAGCTTGCTATCACCTTCACATGGTTCCCAGTTTCGTTCATCCATTGAAGTCAACACTCTTCAGAAACCA CACTCTTTTCACCATACACTCTCCTCACCGTTATGGGGTTCAGCCAAGGTTCTCTTTCTCTTCTTCTTCATCGTCCAAGA TAAGCATGAGCCTCAGGGCTGGTATCGTTGGTCTCCCCAACGTTGGCAAGTCCACACTCTTCAATGCTGTGGTTGAAAAT GGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTGGGGATTGTTGCTGTTCCAGATTCTCGTCT CCATGTGCTCTCTGATCTCAGTAAATCTCAGCGAGTGGTTCCAGCGTCCATAGAGTTTGTAGATATAGCTGGGCTTGTCA AGGGTGCAAGTCAAGGCGAGGGTCTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTTGTA CGATGTTTTGATGACAATGACATTATTCATGTGAATGGGAAAGTTGACCCCAAGTCTGATATTGATGTTATCAACTTGGA GCTTGTTTTCTGTGACTTGGACCAGATTGAGAAAAGACTGGATAAACTAAAGAAGGGCAAGCCGAAGGATTCACAAAGAG TCAAGGAAGAGGCAGAAAAGTCTGCACTGGAGAAGATTCGCGTGGCACTCTTGGATGGAAAACCTGCACGATCTGTGACC TTAACTGATTCTGAAAGGGATGCTGTGAAGCACCTCTGCTTGCTCACAATGAAACCCATTATATATGTGGCAAATGTTGC AGAATCTGATCTAGCTGATCCTGCAAAAAATAATTATGTCAATGATGTCACCAATGTTGCATCTGAGCTGCAGTCAGGAA TCGTAACAGTTTCAGCACAGGTTGAGGCAGAGCTAACTGAACTAGCTACGGAAGAAAGAAAAGAATATCTGAACTCTCTT GGTGTTAGTGAAAGTGGTCTTGGTAACCTAATCAGGGCAACCTATAGCCTTTTGGGGCTGCGAACTTATTTTACGTCTGG TGAGAAGGAAACAAAAGCATGGACGATACTTGCAGGAATGACGGCACCTCAAGCTGCTGGAGTGATTCACTCTGACTTCG AGAAGGGTTTCATTCGAGCAGAGACAGTAAGCATCAAGGATATAATTTTGAACTCCTGTTTATATATATGA
Protein sequence (LotjaGi3g1v0034900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVACYHLHMVPSFVHPLKSTLFRNHTLFTIHSPHRYGVQPRFSFSSSSSSKISMSLRAGIVGLPNVGKSTLFNAVVEN GKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVV RCFDDNDIIHVNGKVDPKSDIDVINLELVFCDLDQIEKRLDKLKKGKPKDSQRVKEEAEKSALEKIRVALLDGKPARSVT LTDSERDAVKHLCLLTMKPIIYVANVAESDLADPAKNNYVNDVTNVASELQSGIVTVSAQVEAELTELATEERKEYLNSL GVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSIKDIILNSCLYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 392 | 344 | 1.8E-201 | – | |
| PANTHER | 49 | 392 | 344 | 1.8E-201 | – | |
| PIRSF | 55 | 392 | 338 | 5.9E-133 | ||
| TIGRFAM | 56 | 389 | 334 | 4.7E-133 | ||
| Gene3D | 58 | 339 | 282 | 1.2E-128 | – | |
| ProSiteProfiles | 58 | 339 | 282 | 40.364 | ||
| SUPERFAMILY | 58 | 362 | 305 | 7.08E-74 | ||
| Pfam | 60 | 172 | 113 | 1.6E-22 | ||
| CDD | 60 | 338 | 279 | 5.21509E-157 | ||
| PRINTS | 60 | 80 | 21 | 2.5E-34 | ||
| PRINTS | 82 | 100 | 19 | 2.5E-34 | ||
| Gene3D | 104 | 389 | 286 | 1.2E-128 | ||
| PRINTS | 126 | 141 | 16 | 2.5E-34 | ||
| PRINTS | 143 | 161 | 19 | 2.5E-34 | ||
| Gene3D | 169 | 258 | 90 | 1.2E-128 | ||
| CDD | 338 | 389 | 52 | 1.66215E-28 | ||
| Pfam | 340 | 389 | 50 | 7.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0034900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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