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Lj3g3v0394900.1

Overview

Field Value
Gene ID Lj3g3v0394900
Transcript ID Lj3g3v0394900.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max] gi|356526427|ref|XP_003531819.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23305:SF12
46 390 345 1.30E-211 –
PANTHER
PTHR23305
46 390 345 1.30E-211 –
PIRSF
PIRSF006641
55 390 336 7.00E-125
IPR004396
TIGRFAM
TIGR00092
56 389 334 1.20E-124
IPR004396
SUPERFAMILY
SSF52540
58 348 291 1.76E-70
IPR027417
ProSiteProfiles
PS51710
58 339 282 40.364
IPR031167
Gene3D
G3DSA:3.40.50.300
59 186 128 2.00E-43
IPR027417
Pfam
PF01926
60 172 113 1.00E-22
IPR006073
CDD
cd01900
60 338 279 4.38E-156 –
PRINTS
PR00326
60 80 21 2.30E-34
IPR006073
PRINTS
PR00326
82 100 19 2.30E-34
IPR006073
PRINTS
PR00326
126 141 16 2.30E-34
IPR006073
PRINTS
PR00326
143 161 19 2.30E-34
IPR006073
Gene3D
G3DSA:1.10.150.300
187 258 72 7.40E-21
IPR023192
Gene3D
G3DSA:3.40.50.300
259 327 69 2.00E-43
IPR027417
Gene3D
G3DSA:3.10.20.30
328 389 62 2.90E-21
IPR012675
SUPERFAMILY
SSF81271
341 389 49 4.80E-16
IPR012676
Pfam
PF06071
344 389 46 5.60E-16
IPR013029

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 26

Expression data

Expression pattern

Expression pattern of Lj3g3v0394900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0394900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.