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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0034900 |
| Transcript ID | LotjaGi3g1v0034900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Obg-like ATPase 1; TAIR: AT1G56050.1 GTP-binding protein-like protein; Swiss-Prot: sp|P37518|YCHF_BACSU Ribosome-binding ATPase YchF; TrEMBL-Plants: tr|I3SBQ5|I3SBQ5_LOTJA Obg-like ATPase 1; Found in the gene: LotjaGi3g1v0034900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3707414..3714896) extracted from Lotus japonicus Gifu genome v1.2.
CATAGCACATAACCTAATCACAAACGGGGGGCATGGAATAGAACCGCATTGAAAATGTTTTCTGGAGATAACACTCTGTC TTTCTGAATCCCTGTCTGTTCCTGCTACCAATGGCAAGAGTAGCTTGCTATCACCTTCACATGGTTCCCAGTTTCGTTCA TCCATTGAAGTCAACACTCTTCAGAAACCACACTCTTTTCACCATACACTCTCCTCACCGTTATGGGGTTCAGCCAAGGT TCTCTTTCTCTTCTTCTTCATCGTCCAAGATAAGCATGAGCCTCAGGGCTGGTATCGTTGGTCTCCCCAACGTTGGCAAG TCCACACTCTTCAATGCTGTGGTAAGCCACTCTCTCTGACTTTGCTTGTGTGTGTAAATTATGTGGGTGTTATTGGTCCC AAATGAGAATGATGTTGTTTTTTTGGCATCTGGGTATTGCTTGAAATGATGGGTCTTTGTTCTATCTGTTCTTCAGCTTT GGAATTGAATGGTTGTTTTTAATTTGCAAAATTAAACTTTAGTTTTGGTATGCTCTGTGATGCAATGCTTTGATTGTTTC CTTTATGGTTTGAGCTATCCTTGTTTTATATTGATTTTGAGGGAGTGGTTGTTGTTGCTTCATTGTTTTTGAAACTCTTT GAATGTGCCATGGTTAAAATTTACTTTCAATTTTGCCCTTAGTTGCTCCTTGGGAATATTTTGAGGGAGTGGTTGTTGTT GCTTCCTTGGTTAAAATTTACTTTCAATTTTGCACTTTCATTGTTTACTCAATTTTTTTTTGAGTTGAAAAAATTGCCAT CATACATCACACTCCTAATTATCCTCTCCTTGATACTCTATTGTTTGATTGTAGTCAGGCTATACATAAGAGATCAGGTG TACAACCCATACACCATTTCTCTTAATCACTCTCTCTTGCAATATGCATTATTGCTTTCATAAGGCTTTTAGCCTTCAAC AAAACTCCAGTTCTTGCTGCTAAGTTATACACATTGTCATAAACCAATTATCCAAAAGCTGTTGGGTAAAGGACTCATGA ATGGTTCTATTATATTTCTAACACGCCCCCTAACACGCCCCCTTACCCCTCACGCAAGAGCCCACTTGGGCTTGATTTGA AGCGTGGACAACGTACAGGCCCACAACTCACCTACTATGTGCTGAAACTCAACTTTTTATCGGAATAATGGGGGCAACAG GTATCAAACTCTAGTCTAGACCACTTGGTTATAGAAGCTCTGATATCATGTCATGAACCAATTATCCCAAAAGCTTAAGC TGTTGGGTAAATGAGACATGAATGATCTATATTGTATTTCTATCACGCCCCCTCGTGCAAGAGCCCACTTGGGCTTGAAG CATGGACAATGCATAGGCTCACCTACCGTGTGCTGAAATTCAAATTTTTACTAGAATTATGGGGTAATAAGGATCAAATT CTAGGCCCACTTGGTTACAGAAGCCTGATACCATGTCATGAACCAATTATCCCCAAAGCTTAAGCTGTTGGGTAAAGGAT ACATGAATGGTTATATTATATTTCTAACATACTTAACTCCCATGCATGCTGCCTCTTGAATATTATAGATTTTTAGATTT TTGTCCTTTTTGAGCACATTAAATAGTCCTGTAAACTGACACAAGTCTTGGTGCTTCACGCAATGCTGTTATTTCGTTTA CATATTTATTCAGGTGCTATGGTAGATCACTAAAACTTATGGGCTCGAGTTTAGGTTGCCACATTCATTTATGATAAAAT AAAGACAGATTCTTACAGGTGGGCTGAAGTTGAATCTAAACGCATAATGTCTTCCTTATACACCAAGAGGCTTTCTTACT TGTGATGGGGTGACTTGTATTTCGAAACTTACTGAAACATACTAAAAAGCAGAGTAAATGTTATGAGATTTGAAATTTCT GGTTTTTGTAATGACAATTTATTTGGGTTTGTTGTTTTACGTAATGGATAATCTACCAGAGGCGCAGGATCCATACTTAT ATTTCCTCTAAGCAATAGTTGTGGAGAAATATGAACCTTGCATGACTACTTTTTTTAAAAAAGTCATTGTTAAATTGGCA TTATGCTTGGAATACATTTATATGCCTTAATATAATCAATTGACTAGCAAAATTTTGTGAGGATTTTTTTTATTGTTTAG TTTCTTTAATTTCTGCTAAACTTTTTGGCTGATTGTTGTATTGATGTTTTTTGTGCATATTGCCCTAGTTCCCAATGCTA TAATAATATATTGAAATTTAATTGATATTGGTCTTTTATTTCTAGGTTGAAAATGGAAAGGCTCAAGCTGCTAATTTTCC ATTTTGTACAATAGAGCCAAATGTGGGGATTGTTGCTGTTCCAGATTCTCGTCTCCATGTGCTCTCTGATCTCAGTAAAT CTCAGCGAGTGGTTCCAGCGTCCATAGAGTTTGTAGATATAGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGTTTTC ATAATTTCTTTTCACCTTCTTTAGTTTGGTTGTCAACACGCACTTTTTTTTATCAATTTATTTATTGTTGTAGAAAATTG CAAATACATTCTTTGATTCCCTATTCTAACTTCAACTGTTACAGGGTCTGGGTAATAAGTTTTTGTCACATATTCGTGAG GTGGACTCTATACTTCAGGTGTTTCCTTGTCATCATTTTTCTTTCATCATTACTTCTGTTATTTTTGTTCCATGTCTTCC CTTATTATGCACCAAATCAGTAGCTATCTACATATTGTTAATCAGAACTTGGAGTTCTGAAATTATTGTGCTTAAACGTA CAGGGTTGTTTTTACTCCATTATCTGATTTAGTATTGAAATGGATCTATTGATTATACATTAGGTTGTACGATGTTTTGA TGACAATGACATTATTCATGTGAATGGGAAAGTTGACCCCAAGTCTGATATTGATGTTATCAACTTGGAGCTTGTTTTCT GTGACTTGGACCAGGTCAGGTTACTAACTTCCATGCTACACAAGTTTACTGCCTTTGTTTCCTTTGAATATGTTATTATT GTTCCAAATGGAATTGGCGACACATTAATGAGTTCAATCATATTTATTGTGCTAATTTGGATGGAGTAATTGTATTTTTT CCTTTCTTTTTACTGTGACCAATGCCTTCAAGTTTTTTGCAGTCTATCTGTTTATGCGCAAAACTTGCTATGTATTTCTA TGACAAAATCGCTCGATAGAACTAAGATTTTCCTCTTTCCTAGAAATGCAGATTGAGAAAAGACTGGATAAACTAAAGAA GGGCAAGCCGAAGGATTCACAAAGAGTCAAGGTTATATTCTTTAAATATTTCCACCTTTCATTGGTCTTTGTTTTTATTA GTTAGAATACATCATTCCGCTTGATTTTGAAATTCTTGATTTTAGGAAGAGGCAGAAAAGTCTGCACTGGAGAAGATTCG CGTGGCACTCTTGGATGGAAAACCTGCACGATCTGTGACCTTAACTGATTCTGAAAGGGATGCTGTGAAGCACCTCTGCT TGCTCACAATGAAACCCATTATATATGTGGCAAATGTTGCAGAATCTGATCTAGCTGATCCTGCAAAAAATAATTATGTC AATGATGTCACCAATGTTGCATCTGAGCTGCAGTCAGGAATCGTAACAGTTTCAGCACAGGTATATATATATACACACTT TGTTTGGATATGAAAAAAGAATGGTGAAAGAAAGTAGGTAGAAATAAATTGGAAAGAAGAGAAATTGGGGCGGGTTTTTT CTCTGGGATGGAGAGAAAGAAAGGCTAAGAACCTATTTAGTTTTCATTTCCATTTTTTATCTTCATTTCCTGTTTTCAGT TTTAATTACAAAAATGCTACATTATTTTGAGGTAGTTTTTTGTTATCAAAATCTTGTACAGCAAACAATGAAAAGAACAT TTTACGATTTTCATTGTTTCCTATGCAAAACTTTAAAATAGGATACAAACAAAAAACAAGCTGACATTTTTGTAGTTAAA ACTGAAAATTGGGATTGGAAATTGAAACCTTTTTCTTAAACCAAACAGGACCTAAAGTAAGATTATAATCTCTCTATACT GAAAGAACAATTATTGACATTCTTGTTATTGTGTCCATGGAGAGTCATGTAAGATGGGTTAACGTGTCCTTGCAGGTTGA GGCAGAGCTAACTGAACTAGCTACGGAAGAAAGAAAAGAATATCTGAACTCTCTTGGTGTTAGTGAAAGTGGTCTTGGTA ACCTAATCAGGGCAACCTATAGCCTTTTGGGGCTGCGAACTTATTTTACGTCTGGTGAGAAGGTAAGAGGAAAAGCTTGA AAAGTTTTAGCGAGCGTTGCAGTTTGGCATATCCTGTAAAGCATATATGCACCGGTAAATTAGTAGCTTGCAGCACTTGA TTCATTATTCAGAACTGATTTGTTTTCGTAATATGAACTCAGGAAACAAAAGCATGGACGATACTTGCAGGTTAGCTTAC TCTCTGGATGAGACTTACTCATTGCACAATACTTTGACTGGATTTCATCCTTTTCTGAGAACCATGTTCATTTAATTTGA CAAATCCTAGCTATTAATTTGACAAATAATAGCTATTAAAATGTTGCCAGTCTTATCTTTGGACATGCAATGTAGAGATA TATTTTTCCTATTGTTGACAAATGCCTGTGTTTAGATTATCTTATGCTCCTTTATTTTGTTATGGAGTAAGTAACCTGAG TGATTGACCAAACTGAATTATGAATAATATAAAGATTAAAGTTAGATTGGATTACTCTTCTAAATTTTAAATCTTCTGTT GTCTAGGAATGACGGCACCTCAAGCTGCTGGAGTGATTCACTCTGACTTCGAGAAGGGTTTCATTCGAGCAGAGACAGTA AGCATCAAGGATATAATTTTGAACTCCTGTTTATATATATGACAGCATATCAGTGTTGTCAAATAGCGGCGCTATAGCGT AGCGTTCTGAGGGCTTTGTGCTATTCCGCTATGAAGGCTTGAAATAGCGGATTTTTGGCTTTCCGCAATTTTCCGTGATC CGCGATTAACAACACTGCAGCACATGCTTAGAAAGTATTGTTAGCATTGTAAACAAAACAGAAAAAGGTTAAGAGGTGAT TTTGATATTCCATATTCTAGATGTGGGGGGGGGGGGTAGACTATATACATGGTAAACTTCAATAGTAAAATTATGAGTAT TTGCAGAACTCCTGGCTTTTAGTACTACTTTCGGTAAATTCTGTTGAACCTAAGCATCATATTTGTAGATGTAAGTAGAT TCTAGTTTCTAGTATTGTACCAGTTATCTCTTAAGTTACTCTTATTATCTAGTCTTCTGTTTAATGACATGTTCCACATT TGTATGTGGCTGGCCATGAAAGTTAAGTAAAGATAAAATAAAGTGAATAAAAGAGAGGACTCCATGAAAACCTATCCAGA AGTCTATTTTACATGACAAAAGGGATGAAAGATGTCTTGATTGAAGCCCATCTTCTCTCAGCTTGTTAATTTCTTGCATT TTGATTCTCATACAGATTGTGATTTGACTGCTTTCCAATTTTCTTGCATGGAAACTCATATTTTCTTACTGTTGATAGCA AGTTTTGATATGTTAGAGTTTTGTATTAAATTTTCTAGAATTGGTTTTCTGCATTCTTTATTCTGATTTATAGATACACA CTAAGATAGACAAAGAGCTGATTCTTGCTGTATTTGGGCAACTGAATCAAGTACACCCTGACAATTTATTTATTTTTATT TGTAATTTTGCATGCTGTTGTGTTTATTTTAAGCATGTCAAAGTTTGCATGCTGCATTCATTAACCTTCATTAAAAATGT TGTTTTTAATTAGGTGTCTTATGATGATTTTGTTGCTGCTGGTTCATTAGCTGCAGCACGAGAGAAAGGAGTTGTAAGTT GCTTATTTCATGTTCCTCCCAGTAAAGTAGGTTTTCTTTTATATTCATGTATATCATGTTAGCCTTAGTAAAATGCATAC CCTTTTATTGACTTCTATTTGTTTCCTATATTGGTTTCTATAAGCACCGGATTATAAAATGTGATTTAGATGAATGCTCA TCTATTTTTTAATTTTTTGTCAATATGACCTAAATTCATTGGTTTTATCAAGAACTTATCCTTATGTTTTCTCCCGTTTT TGTGTCTTATAACAATAAACTGGTACATTGCTGGCATATCAGTTAGGCTATTCAATACTCTGCCACAGTTATACCTATGA GGTTGGAACTGTTTGAATATATATTTATATATAAATCAAGTATTTGGATAAATCAATTCAAAAACTGACAACTTAAATTG ATGTATTTTAATTAATTGTCATTTTCGAACAATTTTGTTTGGATAAATATTTTAAAAGTTGGATGAAGAGTATTTAATAG GTTGAGGGGGGAGAGAGGAGAGTTGAGAGGAGGTATTTTTAGAATTTGTTCTAAAAGGGTGAAAATCCTTTATCTTGAGT TAGGAAATTATCCTATAAAATTACCTGGTATTTTTAAAATTCTCTTATTTGATATGCAAACAAATTCTTTTTGGTTTCAG AAATTTGAAATTCTCAACAAATACATTCCCTCAATTAAATCCCCTATCCAAACAAGGGATTACATGGCTACTGCTTCATG ATTATTTGTACATAAGGGGTTGATAGTAGTGGGTAGGAACTAGGAAGAGCTTGGTTCCTTAAATAATCCATGTATGCTGT AATTATGTTGTGAATGAATATTCATTTCCCTTCCCCTGCTGGACCTCTACAAATTCATAAACAGGAAATCATTTCCTTTT CTCGTGTGCCATCATTCTAATTTTACTGAAATATGTTGTTTGCAGTTGAGATCTGAAGGTAAAGATTACATTGTACAAGA AGGTGATGTCATGTTGTTTCGATTCAATGTTTAGCAGAACTTACAGCTCCCAGCTGAGAGTCAGTGGAGAAATTGAGATG TAATTTATGACTAAGGTCAGGAAAATTTTCAGCCAATTGCTGGTTATAGTTTGCATAAGCATTGTTTTGTTATAGGGACA AATGCTCCCTGTTAGGAGCCAGTGAAGAGTTGAAACAATATATGACTACAGGTCCCCAAATTTTCTCAGCCAATTGCTGA TTATGATCTGGAAGAGGCATTGTATTTTTTAGTGAAAAAAGGTTAATTTTTTAGTGCAATGCATAAAATTTGCTTGAATA TTTATATATGAAAAGTCTCTCCCCCCCCCCCCCCCCTCCCCCCATTGGACTAAATTTTAAAATATAACAAATATATGCAA GATATACATGCCGTGTCATTACACTCCAATCTAAACACGAGCAGCTTCTTTACATGCACCTTGTTTTTTTCATTTGGCAT CATCAGATAATGTTTAATTTAGTGCTTGTTTGGATAACTTTATCAGAATTGATTGTGATTTGTGATTGTAGTTGATTTTG TTAAACTTGATTATGATAATAGTGAGTTGAAACTTGAAAGCGA
CDS sequence (LotjaGi3g1v0034900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGAGTAGCTTGCTATCACCTTCACATGGTTCCCAGTTTCGTTCATCCATTGAAGTCAACACTCTTCAGAAACCA CACTCTTTTCACCATACACTCTCCTCACCGTTATGGGGTTCAGCCAAGGTTCTCTTTCTCTTCTTCTTCATCGTCCAAGA TAAGCATGAGCCTCAGGGCTGGTATCGTTGGTCTCCCCAACGTTGGCAAGTCCACACTCTTCAATGCTGTGGTTGAAAAT GGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTGGGGATTGTTGCTGTTCCAGATTCTCGTCT CCATGTGCTCTCTGATCTCAGTAAATCTCAGCGAGTGGTTCCAGCGTCCATAGAGTTTGTAGATATAGCTGGGCTTGTCA AGGGTGCAAGTCAAGGCGAGGGTCTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCTATACTTCAGGTTGTA CGATGTTTTGATGACAATGACATTATTCATGTGAATGGGAAAGTTGACCCCAAGTCTGATATTGATGTTATCAACTTGGA GCTTGTTTTCTGTGACTTGGACCAGATTGAGAAAAGACTGGATAAACTAAAGAAGGGCAAGCCGAAGGATTCACAAAGAG TCAAGGAAGAGGCAGAAAAGTCTGCACTGGAGAAGATTCGCGTGGCACTCTTGGATGGAAAACCTGCACGATCTGTGACC TTAACTGATTCTGAAAGGGATGCTGTGAAGCACCTCTGCTTGCTCACAATGAAACCCATTATATATGTGGCAAATGTTGC AGAATCTGATCTAGCTGATCCTGCAAAAAATAATTATGTCAATGATGTCACCAATGTTGCATCTGAGCTGCAGTCAGGAA TCGTAACAGTTTCAGCACAGGTTGAGGCAGAGCTAACTGAACTAGCTACGGAAGAAAGAAAAGAATATCTGAACTCTCTT GGTGTTAGTGAAAGTGGTCTTGGTAACCTAATCAGGGCAACCTATAGCCTTTTGGGGCTGCGAACTTATTTTACGTCTGG TGAGAAGGAAACAAAAGCATGGACGATACTTGCAGGAATGACGGCACCTCAAGCTGCTGGAGTGATTCACTCTGACTTCG AGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGATGATTTTGTTGCTGCTGGTTCATTAGCTGCAGCACGAGAGAAA GGAGTTTTGAGATCTGAAGGTAAAGATTACATTGTACAAGAAGGTGATGTCATGTTGTTTCGATTCAATGTTTAG
Protein sequence (LotjaGi3g1v0034900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVACYHLHMVPSFVHPLKSTLFRNHTLFTIHSPHRYGVQPRFSFSSSSSSKISMSLRAGIVGLPNVGKSTLFNAVVEN GKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVV RCFDDNDIIHVNGKVDPKSDIDVINLELVFCDLDQIEKRLDKLKKGKPKDSQRVKEEAEKSALEKIRVALLDGKPARSVT LTDSERDAVKHLCLLTMKPIIYVANVAESDLADPAKNNYVNDVTNVASELQSGIVTVSAQVEAELTELATEERKEYLNSL GVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREK GVLRSEGKDYIVQEGDVMLFRFNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 424 | 376 | 3.4E-221 | – | |
| PANTHER | 49 | 424 | 376 | 3.4E-221 | – | |
| TIGRFAM | 56 | 424 | 369 | 9.6E-149 | ||
| Hamap | 57 | 424 | 368 | 42.862 | ||
| Gene3D | 58 | 339 | 282 | 1.7E-147 | – | |
| ProSiteProfiles | 58 | 339 | 282 | 40.364 | ||
| SUPERFAMILY | 58 | 362 | 305 | 6.54E-75 | ||
| PRINTS | 60 | 80 | 21 | 3.1E-34 | ||
| CDD | 60 | 338 | 279 | 4.02539E-157 | ||
| Pfam | 60 | 172 | 113 | 1.8E-22 | ||
| PRINTS | 82 | 100 | 19 | 3.1E-34 | ||
| Gene3D | 104 | 422 | 319 | 1.7E-147 | ||
| PRINTS | 126 | 141 | 16 | 3.1E-34 | ||
| PRINTS | 143 | 161 | 19 | 3.1E-34 | ||
| Gene3D | 169 | 258 | 90 | 1.7E-147 | ||
| CDD | 338 | 422 | 85 | 2.1835E-53 | ||
| Pfam | 340 | 423 | 84 | 8.3E-39 | ||
| SUPERFAMILY | 340 | 421 | 82 | 3.49E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0034900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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