Domain Predictions — View

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IPR013842

Source: InterPro

Description

IPR013842 is a GTP-binding protein LepA, C-terminal.

<p>The elongation factor 4 (LepA or GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. LepA is a noncanonical GTPase that has an unknown function. It is highly conserved and present in bacteria, mitochondria, and chloroplasts [[cite:PUB00085883]].</p> <p>LepA contains domains that are homologous to EF-G domain I, II, III, V. However, it also contains a C-terminal domain (CTD) that is not homologous to any region in EF-G. This entry represents the unique C-terminal region of LepA [[cite:PUB00050954]]. The CTD of LepA may play a primary role in back translocation by providing additional binding interactions with a back-translocated tRNA [[cite:PUB00050954]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1380860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi\|502137208\|ref\|XP_004503008.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.240 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR009022 IPR013842 IPR027417 IPR027518 IPR031157 MF_00071 MF_03138 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF189 SM00838 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709	35
LotjaGi1g1v0327700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 4; TAIR: AT5G08650.1 Small GTP-binding protein; Swiss-Prot: sp\|A5B4D2\|GUFP_VITVI Translation factor GUF1 homolog, chloroplastic; TrEMBL-Plants: tr\|A0A0S3REW3\|A0A0S3REW3_PHAAN Translation factor GUF1 homolog, chloroplastic; Found in the gene: LotjaGi1g1v0327700	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.2570 G3DSA:3.30.70.3380 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR013842 IPR027417 IPR031157 IPR035647 IPR035654 IPR038363 MF_00071 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR43512 PTHR43512:SF1 SM00838 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709 cd16260	37
LotjaGi1g1v0500000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp\|B9RUN8\|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr\|A0A151TAY4\|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.2570 G3DSA:3.30.70.3380 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR013842 IPR027417 IPR031157 IPR035647 IPR035654 IPR038363 MF_00071 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR43512 PTHR43512:SF3 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709 cd16260	36
LotjaGi1g1v0500000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp\|B9RUN8\|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr\|A0A151TAY4\|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.2570 G3DSA:3.30.70.3380 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR013842 IPR027417 IPR031157 IPR035647 IPR035654 IPR038363 MF_00071 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR43512 PTHR43512:SF3 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709 cd16260	36
LotjaGi1g1v0500000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp\|B9RUN8\|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr\|A0A151TAY4\|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.2570 G3DSA:3.30.70.3380 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR013842 IPR027417 IPR031157 IPR035647 IPR035654 IPR038363 MF_00071 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR43512 PTHR43512:SF3 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709 cd16260	36
LotjaGi1g1v0500000.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp\|B9RUN8\|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr\|A0A151TAY4\|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000	Domains G3DSA:2.40.30.10 G3DSA:3.30.70.2570 G3DSA:3.30.70.3380 G3DSA:3.30.70.870 G3DSA:3.40.50.300 IPR000640 IPR000795 IPR004161 IPR005225 IPR006297 IPR009000 IPR013842 IPR027417 IPR031157 IPR035647 IPR035654 IPR038363 MF_00071 PF00009 PF00679 PF03144 PF06421 PR00315 PS00301 PS51722 PTHR43512 PTHR43512:SF3 SSF50447 SSF52540 SSF54980 TIGR00231 TIGR01393 cd01890 cd03699 cd03709 cd16260	36

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16260	CDD	1	16.67