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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0500000 |
| Transcript ID | LotjaGi1g1v0500000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 4; TAIR: AT5G39900.1 Small GTP-binding protein; Swiss-Prot: sp|B9RUN8|GUF1_RICCO Translation factor GUF1 homolog, mitochondrial; TrEMBL-Plants: tr|A0A151TAY4|A0A151TAY4_CAJCA Translation factor GUF1 homolog, mitochondrial; Found in the gene: LotjaGi1g1v0500000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101613750..101619123) extracted from Lotus japonicus Gifu genome v1.2.
TCTCCTCTGATTCTCATCCATGTTCAACACAGCGCAGTTTCAGTGATCGAAACCCAACCAAAACCCTGAAATGGGTTATC TACGCAAAGCTTCCAAGACATTGAGGCAATCAAATTGCCTCTCGTTGCTGTTCAATTTCACTCCATTAACCACCAGAATA ACCCATCAAAGCTTTTCCATTACGCGTGCTTTGTTCTGTTCCCAGTCCCGCCAGAACAACACCAGAGAGAAGAGCATCAT TGATTTGACCCAGTACCCTCCAGAACTCATCAGAAACTTCTCCATCATTGCTCATGTTGATCATGGCAAGTCCACTCTTG CTGATCGCCTTCTTGAGCTCACTGGAACCATTAAGAAAGGCCTTGGCCAGCCTCAGTATCTTGATAAGTTGCAGGTACTT TGTGTTGTTTAGAAAAATTAAAAAAATCAAAAATTTTCATCTGGGTATGTGTTTTTGTAATGTTTTATGAAATGGGTATT GTCCAAAATTTGTTCTTTTTGAAGAATTTCTTTAGGTTCATTACTAGGATGTGGAATGGGAAAATGGGTTGAATGAAAAT TTTGAAATTTTAGTGGTTGTTATGTCGCTTTAGTTTTCTGTAGTACATGACTTATTGGTGTTAGTTTGGAATATCTTAGG TGGAGAGAGAAAGGGGAATCACTGTTAAAGCACAGACAGCAACAATGTTCTATAAGAACATCATAAATGGTGATAAGTGT AGTGATGGAACGGAGTCACCTACTTATTTGGTGAATCTTATTGACACTCCTGGTCATGTGGATTTTAATTATGAAGTGTC AAGGTCACTGGCTGCTTGCCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTCCAAGCACAAACCGTTGCTAACT TTTACCTTGCTTTTGAGTCTAACCTAACGATTGTACCTGTAATAAACAAGATTGACCAGCCGACTGCTGATCCTGATCGG GTTATAGCACAATTGAAATCAATGTTTGATCTTGATCCAAGTGATGCGCTGCTAACGTCTGCTAAAACTGGGCAAGGTCT TGAGCAAGTCCTTCCGGCAGTCATAGAGCGTATACCTCCGCCTCCAGGGAGGAACGAATCTCCTCTGCGCATGCTCTTAC TTGATTCATATTATGATGAATACAAAGGTGTAATATGCCATGTCGCTGTTATTGATGGTACCCTGCGCAAGGGTGACAAG ATTGCTGCTGTTGCTACTGGCCAGTCTTATGAAGCTTTTGACATAGGCATCCTGCACCCTGAACTTACACCTACTGGAAT CTTGCTTGCTGGACAAGTTGGTTATGTTGTTAGTGGCATGCGGTCAACAAAAGAGGCACGTATTGGAGATACAATTTACC ATGTGCGAAGAACCGTAGAGCCTCTTCCAGGTATAGCTGTCATCTTTTACCTCCTATCTTCAGTCATTGATCTGTTAACA TTGTAGTTGGATACCATGAAGTTGCTTGAATCTTTTATTCATTGACGATTGTAGGCTGAACCCTTTCATATAGGCTATTC ATACTGCTATTTACTGCATAGAATTTTGTGGATCATGTATACCCCATTCACTTTTGCAACACTTGTAGGTAATGGACTTA CATAAAATGTAATAAGTTCATTTCATTTTTTTTTTTAGGTTTTTTAGAAACAAGTACCTAATAATGAATGTGATATGTTA TTTACTGTTCGTTCTTTTTGCCGGTGTATAAGAGTATGAACATATATAGTATCTATGAGTGCATTTCCTTGGCCTGAATG TCATGTTTATAAACTATTTCATAATTTTAAACTTTAGGCTTCAAGCCAGCAAGACATATGGTATTCTCTGGTCTTTATCC AGCTGATGGATCTGATTTTGAAGCACTCAATCATGCAGTAGAGAGGCTGACATGCAATGATGCCAGTGTCTCTGTTTCAA AAGAAACTAGCACTGCTCTAGGTCTGGGATTCAGGTATCAAAAGAATGGAACAGGAATTTGGTTTTGTTAAATGTTAAAA CATAGGAAGCTTCATATGGAATAGCTTTTAAAGTTTCTTTTTGTATTTCATCAGGTGTGGATTTTTAGGCCTTCTTCACA TGGATGTTTTTCATCAAAGGCTTGAACAGGTAAAATATCTTATGCTGATGATGACGATAGATTTTGCAAAAGAACATAGA GAAAATTTATGAACTGTATGTATGCTCCATAGCATTAGCATTGCTATGTGATTCGTCACGGAATGACCAAATTTGTGTAT ATGCGGTATATTTGGAAAAAATCAATTTTTTAATAGGAACTTAAAGTTTTTTCCTCCTGTTTTCTAGCATGGTGACGTTG TGACAAATATTGTGTTTGTTTAAGCAGGAGTATGGAGCTCATGTAATCTCAACTGTTCCTACCGTGCCTTATACATTTGA GTATTCTGATGGCAGGTAGATAACAAAACTGTTCTTTTCAGACTAAGTTCCTTTGTGATTTACTGATACTCTGGGTGTGC TTTGCAGCAAGTTAGAAGTTCAGAATCCTGCAACATTACCCTCTAATCCCAAGCAACGAGTGACGGCCTGTTGGGAACCT ACAGTTTTAGCTACCATAATTATTCCTAGTGAGTAAGCTCTTCTACAACCCTGAGTATAATTTATTTGCTTCTTTTAGAG CTGAAATTAACTTAACTATCTTAATTAATGGGTGATTAAGGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGA GGTCAGCAGTTGGAATACTCATTCATTGACAGGTACAATTTTGCCAGTTCCATTTCATTAACATAGCAAACAATTAATAC ATATTATGAAAATTTATGTGATTTGCTTATACTCATTGCCTAAGATTATCGACTAAATTTGACACCAACTTCAGCACTAT TCTGTGTTTGTTTGTCCTTGAACTTAACTTGGGCCAAAGAAATTATCCTTTATGTTTCTTTCCTGCAGTCAACGGGTATT CATGAAGTATCGCCTGCCTTTAAGGGAAATTGTTGTCGACTTTTATAATGAATTGAAGAGTATAACATCAGGTTATGCAT CGTTTGATTATGAGGATTCAGAGTAAGTTCCTCTAGCCCCATTCCATCTCCCTATAACTGTATGTATGACGCTTGTTTTG CACCCACTCCTATTTGATCAGTACATGCGGTGTTTAGTTAGAAACAGTTATCTCGTACATGTCAATGTGGATTGGTATGG AGAAGTTGTGGTACCTGGTGGGTGAACTGTAGCTATTCTCATCTACTGTTGTTTGGGCAATAATTATGATATATTATATA TTTATTAGCTTCCTATGTTACCAAATTGTATAAGCAAGTATTTTTGTATATTAGCACTGGCATACTTCTAGTGCCTGCCT TTTAATGCATTTGATGGACACAATTACAGTTATCAACTAGCTGATCTGGTGAAACTCGATATTCTCTTGAATGGGCAACC AGTTGATGCAATGGCAACCATTGTTCATACCTCGAAAGCATATCGTGTTGGGCGTGAATTGGTGGAGAAATTGAAGAAAG CCATAGACAGGTAATTCAGTCTGAGAAAATGTTTTGTCTTACACCTCTTAGTTAGTTTGAACTCATCCTAAAATCATCTA AACTTTGATCAGGCAAATGTTCGAGATAACCGTACAAGCTGCCATTGGGTCTAAAATTATAGCAAGGGAGACGTAAGCTT CTGTTCAAAGTATTGTGCTAATGTGTATTTTTTGGAATGGTTGCTGTAAAACCTTTAGCTTCTGATATGAAAGTAACAAT CTTGATCAGAGTCATATTATTAGTCATTTTCAAAAGCAATGGACTGAAGGTAAAGTAATTTATTCATTTGTTCTTCCATG CTAAAATTCTTTTCATTTATTATAGGATTTCCGCAATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATATTACT CGAAAAAGGAAGCTATTGGAGAAACAAAAGGAAGGAAAGAAGCGAATGAAGCGTGTTGGTTCTGTTGATATACCACAAGA AGCATTCCATGAACTATTGAAGGTTTCATAGCTGACATGTTTGAAGATTCTACATTGGTAATGACTTCTTGTTTCCCTTT TTAGTTTTCCAATAATATTCAGGTGCTTCACCAAATTCCGAAATGCATATTGTGTCCAGTCTTATTGATCTGAAAATCAG ACCAATTATTTGATACTATAACATAAATATGTGATAATGAAGCAGAAAAGAAGATGATAAAATAACATAAATTACAGGTG GAGCTTTTAGTCTATTATCTATAAATGGATGAATTAATTATTGTCTACCTTTATCTTTGTAATTAAATAGACAAACTGTT TATCATAGGACAACTAGTTTTATGGTTTAACTGTACAACAACAAAAAACAGCAACAAAAGCCTTATCCTACTAGGTGAGG TCGGCTATATGAATCACACTACGCCATTGCGTTCGATCAAAAACCAGATTTGTTGAGATATTATTGAGAATGAGGTCATC TTTAACAATATCTTCACATGTTCTTTTTGGCCTTCGTCTACCCCTTTTCACAGGACTGGACCTTTTCACCCGGGCCTCCA AATGTCTTCTTTGTACATGTTCATACCAGCTTGCCTGATTTTCCGTCAGCTTCTTTTTGGTAGGCGCTATCTACCCCTAT ATCTCCTGTTATAAGATCATTGTGAATCCTATCCTTTCTAGTACGACCACTCATCCATTTGAACATTCTTCTGCTACTCC AACTTTTTTCTCATTTTGCCTTGTTGAAGCCGAACATTCACTACCATAGAGGATAGCAGGTCTTATTGCAGTCTATAAAA CTTTTCTTTGAGCTTGTAAAACGTAAATTTAACTCTGGTTTTATTGACGTGGTTTATTATTTCTTTGATTGAACCTCTTA CTTTTCACTACTCAAGCCATCCCATTGCTTAGTACTAGTATTGTGAAAACTATTCAATAAGTTCCATTATGGGCATTCCC ATGATATAAGTGGGTAGTAACTGAGTTTTTCTCCATTTTCCAGTTTTTCCCCCCTGTTTTGGAGGTTGTGATCTAGTGCT GGCACAAAATTCTACATTGTGGAATTTGCTAGGAGAGGACAACGCAAACAATAATGAGGAATGGTGAAAGCAATTTACCC AGCAGCTTTCAGTGAAACCCCATTGCACCTTTTCAAATCGATCTCTTTGATAAGTCAAAATGACAATTTCTTTGTAACAG TTGAATATGTATTCTTCTATTTATTGATTCTATATGATAGAAATCAGAATCCATAGATTGAGTTCTCTCTGAAATTTTTG GTCTAGAGGAAATGAATTGTGGTTTTCTTATAGTTCATCTCAGCCACGATTTTATGTGCATAAACATGTTCTCAACCATC TCATTGTTCTTGGA
CDS sequence (LotjaGi1g1v0500000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTATCTACGCAAAGCTTCCAAGACATTGAGGCAATCAAATTGCCTCTCGTTGCTGTTCAATTTCACTCCATTAAC CACCAGAATAACCCATCAAAGCTTTTCCATTACGCGTGCTTTGTTCTGTTCCCAGTCCCGCCAGAACAACACCAGAGAGA AGAGCATCATTGATTTGACCCAGTACCCTCCAGAACTCATCAGAAACTTCTCCATCATTGCTCATGTTGATCATGGCAAG TCCACTCTTGCTGATCGCCTTCTTGAGCTCACTGGAACCATTAAGAAAGGCCTTGGCCAGCCTCAGTATCTTGATAAGTT GCAGGTGGAGAGAGAAAGGGGAATCACTGTTAAAGCACAGACAGCAACAATGTTCTATAAGAACATCATAAATGGTGATA AGTGTAGTGATGGAACGGAGTCACCTACTTATTTGGTGAATCTTATTGACACTCCTGGTCATGTGGATTTTAATTATGAA GTGTCAAGGTCACTGGCTGCTTGCCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTCCAAGCACAAACCGTTGC TAACTTTTACCTTGCTTTTGAGTCTAACCTAACGATTGTACCTGTAATAAACAAGATTGACCAGCCGACTGCTGATCCTG ATCGGGTTATAGCACAATTGAAATCAATGTTTGATCTTGATCCAAGTGATGCGCTGCTAACGTCTGCTAAAACTGGGCAA GGTCTTGAGCAAGTCCTTCCGGCAGTCATAGAGCGTATACCTCCGCCTCCAGGGAGGAACGAATCTCCTCTGCGCATGCT CTTACTTGATTCATATTATGATGAATACAAAGGTGTAATATGCCATGTCGCTGTTATTGATGGTACCCTGCGCAAGGGTG ACAAGATTGCTGCTGTTGCTACTGGCCAGTCTTATGAAGCTTTTGACATAGGCATCCTGCACCCTGAACTTACACCTACT GGAATCTTGCTTGCTGGACAAGTTGGTTATGTTGTTAGTGGCATGCGGTCAACAAAAGAGGCACGTATTGGAGATACAAT TTACCATGTGCGAAGAACCGTAGAGCCTCTTCCAGGCTTCAAGCCAGCAAGACATATGGTATTCTCTGGTCTTTATCCAG CTGATGGATCTGATTTTGAAGCACTCAATCATGCAGTAGAGAGGCTGACATGCAATGATGCCAGTGTCTCTGTTTCAAAA GAAACTAGCACTGCTCTAGGTCTGGGATTCAGGTGTGGATTTTTAGGCCTTCTTCACATGGATGTTTTTCATCAAAGGCT TGAACAGGAGTATGGAGCTCATGTAATCTCAACTGTTCCTACCGTGCCTTATACATTTGAGTATTCTGATGGCAGCAAGT TAGAAGTTCAGAATCCTGCAACATTACCCTCTAATCCCAAGCAACGAGTGACGGCCTGTTGGGAACCTACAGTTTTAGCT ACCATAATTATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGAGGTCAGCAGTTGGAATACTC ATTCATTGACAGTCAACGGGTATTCATGAAGTATCGCCTGCCTTTAAGGGAAATTGTTGTCGACTTTTATAATGAATTGA AGAGTATAACATCAGGTTATGCATCGTTTGATTATGAGGATTCAGATTATCAACTAGCTGATCTGGTGAAACTCGATATT CTCTTGAATGGGCAACCAGTTGATGCAATGGCAACCATTGTTCATACCTCGAAAGCATATCGTGTTGGGCGTGAATTGGT GGAGAAATTGAAGAAAGCCATAGACAGGCAAATGTTCGAGATAACCGTACAAGCTGCCATTGGGTCTAAAATTATAGCAA GGGAGACGATTTCCGCAATGAGAAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATATTACTCGAAAAAGGAAGCTATTG GAGAAACAAAAGGAAGGAAAGAAGCGAATGAAGCGTGTTGGTTCTGTTGATATACCACAAGAAGCATTCCATGAACTATT GAAGGTTTCATAG
Protein sequence (LotjaGi1g1v0500000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYLRKASKTLRQSNCLSLLFNFTPLTTRITHQSFSITRALFCSQSRQNNTREKSIIDLTQYPPELIRNFSIIAHVDHGK STLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDKCSDGTESPTYLVNLIDTPGHVDFNYE VSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVIAQLKSMFDLDPSDALLTSAKTGQ GLEQVLPAVIERIPPPPGRNESPLRMLLLDSYYDEYKGVICHVAVIDGTLRKGDKIAAVATGQSYEAFDIGILHPELTPT GILLAGQVGYVVSGMRSTKEARIGDTIYHVRRTVEPLPGFKPARHMVFSGLYPADGSDFEALNHAVERLTCNDASVSVSK ETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYTFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVLA TIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQLADLVKLDI LLNGQPVDAMATIVHTSKAYRVGRELVEKLKKAIDRQMFEITVQAAIGSKIIARETISAMRKNVLAKCYGGDITRKRKLL EKQKEGKKRMKRVGSVDIPQEAFHELLKVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 669 | 621 | 0.0 | – | |
| PANTHER | 49 | 669 | 621 | 0.0 | – | |
| Hamap | 60 | 670 | 611 | 250.193 | ||
| Gene3D | 64 | 258 | 195 | 1.9E-67 | – | |
| SUPERFAMILY | 64 | 278 | 215 | 1.65E-53 | ||
| ProSiteProfiles | 65 | 257 | 193 | 58.304 | ||
| TIGRFAM | 66 | 669 | 604 | 1.4E-253 | ||
| Pfam | 67 | 254 | 188 | 5.8E-50 | ||
| CDD | 68 | 256 | 189 | 9.82075E-120 | – | |
| PRINTS | 69 | 82 | 14 | 5.8E-12 | ||
| TIGRFAM | 70 | 244 | 175 | 1.9E-18 | ||
| ProSitePatterns | 105 | 120 | 16 | - | ||
| PRINTS | 112 | 120 | 9 | 5.8E-12 | ||
| PRINTS | 147 | 157 | 11 | 5.8E-12 | ||
| PRINTS | 199 | 208 | 10 | 5.8E-12 | ||
| SUPERFAMILY | 255 | 352 | 98 | 1.01E-15 | ||
| Gene3D | 260 | 357 | 98 | 8.5E-34 | – | |
| CDD | 264 | 349 | 86 | 5.15888E-40 | – | |
| Pfam | 278 | 348 | 71 | 1.4E-7 | ||
| Gene3D | 358 | 439 | 82 | 3.1E-33 | – | |
| CDD | 365 | 440 | 76 | 4.92956E-44 | – | |
| SUPERFAMILY | 366 | 443 | 78 | 4.32E-13 | ||
| Gene3D | 440 | 552 | 113 | 6.6E-40 | – | |
| SUPERFAMILY | 474 | 568 | 95 | 6.23E-24 | ||
| Pfam | 475 | 560 | 86 | 1.3E-22 | ||
| CDD | 475 | 554 | 80 | 3.07594E-41 | ||
| Gene3D | 554 | 628 | 75 | 3.8E-35 | ||
| Pfam | 562 | 668 | 107 | 2.9E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0500000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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