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IPR009022 is a Elongation factor G, domain III.
<p>EF2 (or EFG) participates in the elongation phase of protein synthesis by promoting the GTP-dependent translocation of the peptidyl tRNA of the nascent protein chain from the A-site (acceptor site) to the P-site (peptidyl tRNA site) of the ribosome. EF2 also has a role after the termination phase of translation, where, together with the ribosomal recycling factor, it facilitates the release of tRNA and mRNA from the ribosome, and the splitting of the ribosome into two subunits [[cite:PUB00014828]]. EF2 is folded into five domains, with domains I and II forming the N-terminal block, domains IV and V forming the C-terminal block, and domain III providing the covalently-linked flexible connection between the two. Domains III and V have the same fold (although they are not completely superimposable and domain III lacks some of the superfamily characteristics), consisting of an α/β sandwich with an antiparallel β-sheet in a (β/α/β)x2 topology [[cite:PUB00011746]]. This double split β/α/β fold is also seen in a number of ribonucleotide binding proteins. It is the most common motif occurring in the translation system and is referred to as the ribonucleoprotein (RNP) or RNA recognition (RRM) motif.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1| | 43 | ||
– | PREDICTED: GTP-binding protein TypA/BipA homolog [Cicer arietinum] gi|502143941|ref|XP_004505523.1| | 36 | ||
– | PREDICTED: elongation factor G, mitochondrial-like [Cicer arietinum] gi|502166590|ref|XP_004513932.1| | 16 | ||
– | PREDICTED: elongation factor G, mitochondrial-like [Glycine max] gi|356541316|ref|XP_003539124.1| | 15 | ||
– | PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| | 28 | ||
– | PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Cicer arietinum] gi|502137208|ref|XP_004503008.1| | 35 | ||
– | PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Glycine max] gi|356530066|ref|XP_003533605.1| | 25 | ||
– | PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1| | 32 | ||
– | 14 | |||
– | PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| | 38 | ||
– | Elongation factor EF-2 [Medicago truncatula] gi|357451779|ref|XP_003596166.1| | 35 | ||
– | Elongation factor EF-2 [Medicago truncatula] gi|357451821|ref|XP_003596187.1| | 38 | ||
– | PREDICTED: elongation factor 2-like [Glycine max] gi|356525774|ref|XP_003531498.1| | 35 | ||
– | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Cicer arietinum] gi|502151359|ref|XP_004508402.1| | 38 | ||
– | PREDICTED: GTP-binding protein TypA/BipA homolog [Glycine max] gi|356500497|ref|XP_003519068.1| | 32 | ||
– | Elongation factor G; TAIR: AT1G45332.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|Q9C641|EFGM1_ARATH Elongation factor G-1, mitochondrial; TrEMBL-Plants: tr|A0A151SGJ9|A0A151SGJ9_CAJCA Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 | 16 | ||
– | Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 | 51 | ||
– | Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 | 49 | ||
– | Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|A0A0S3RVP1|A0A0S3RVP1_PHAAN Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 | 51 | ||
– | Elongation factor G; TAIR: AT2G45030.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|F4IW10|EFGM2_ARATH Elongation factor G-2, mitochondrial; TrEMBL-Plants: tr|V7B4Z6|V7B4Z6_PHAVU Elongation factor G, mitochondrial; Found in the gene: LotjaGi1g1v0600400 | 45 | ||
– | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A151SKP1|A0A151SKP1_CAJCA Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 | 46 | ||
– | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 | 46 | ||
– | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 | 46 | ||
– | Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900 | 46 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 4.17 |