Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR013953

Source: InterPro

Description

IPR013953 is a FACT complex subunit Spt16 domain.

<p>This entry represents a domain found in the central region of FACT complex subunit SPT16 from diverse eukaryotes [[cite:PUB00101031], [cite:PUB00101034]]. FACT is a general chromatin factor that acts to reorganise nucleosomes [[cite:PUB00070237], [cite:PUB00070238]]. This entry covers the dimerization domain (DD), which straddles nucleosomal DNA at the H2A-H2B dyad [[cite:PUB00101032]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript Name Description Predicted domains Domain count
Lj1g3v2776600.1
– PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1|
Domains
17
Lj6g3v0388030.1
–
Domains
19
Lj6g3v0388030.2
–
Domains
19
Lj6g3v0388060.1
– PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1|
Domains
16
Lj6g3v0388070.1
–
Domains
16
Lj6g3v0389080.2
– PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356569402|ref|XP_003552890.1|
Domains
19
LotjaGi1g1v0481300.1
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300
Domains
27
LotjaGi1g1v0481300.2
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300
Domains
27
LotjaGi6g1v0051400.1
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400
Domains
26
LotjaGi6g1v0051400.2
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400
Domains
26
LotjaGi6g1v0051400.3
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400
Domains
26
LotjaGi6g1v0051500.1
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500
Domains
26
LotjaGi6g1v0051500.2
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500
Domains
26
LotjaGi6g1v0051500.3
– FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500
Domains
26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 7.14