Domain Predictions — View

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IPR027368

Source: InterPro

Description

IPR027368 is a tRNA modification GTPase MnmE domain 2.

<p>MnmE, also called TrmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs [[cite:PUB00017431]]. This protein and GidA form an alpha2/beta2 heterotetramer.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0352669.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE [Medicago truncatula] gi\|358349532\|ref\|XP_003638789.1\|	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 MF_00379 PF01926 PF10396 PF12631 PS51709 PTHR11649 PTHR11649:SF56 SSF52540 TIGR00231 TIGR00450 cd04164	24
Lj0g3v0352669.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tRNA modification GTPase MnmE-like [Cicer arietinum] gi\|502130302\|ref\|XP_004500604.1\|	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 PF01926 PF10396 PF12631 PTHR11649 PTHR11649:SF56 SSF103025 SSF116878	17
LotjaGi1g1v0246400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp\|Q3MBM5\|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr\|G8A389\|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 MF_00379 PF01926 PF10396 PF12631 PS51709 PTHR42714 PTHR42714:SF1 SSF52540 TIGR00231 TIGR00450 cd04164	24
LotjaGi1g1v0246400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp\|Q3MBM5\|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr\|K7KJB6\|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 PF01926 PF10396 PF12631 PTHR42714 PTHR42714:SF1 SSF103025 SSF52540 TIGR00231 TIGR00450 cd04164	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd04164	CDD	1	25.00