Domain Predictions — View

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TIGR00450

Source: TIGRFAM

Description

mnmE_trmE_thdF: tRNA modification GTPase TrmE

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003924 View details of GO:0003924 AmiGO InterPro QuickGO	Molecular function	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.	Subterm of GO:0017111
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of GO:0032550 GO:0032561 GO:0035639
GO:0006400 View details of GO:0006400 AmiGO InterPro QuickGO	Biological process	TRNA modification	The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.	Subterm of GO:0008033 GO:0009451

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0352669.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE [Medicago truncatula] gi\|358349532\|ref\|XP_003638789.1\|	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 MF_00379 PF01926 PF10396 PF12631 PS51709 PTHR11649 PTHR11649:SF56 SSF52540 TIGR00231 TIGR00450 cd04164	24
LotjaGi1g1v0246400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp\|Q3MBM5\|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr\|G8A389\|G8A389_MEDTR tRNA modification GTPase trmE; Found in the gene: LotjaGi1g1v0246400	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 MF_00379 PF01926 PF10396 PF12631 PS51709 PTHR42714 PTHR42714:SF1 SSF52540 TIGR00231 TIGR00450 cd04164	24
LotjaGi1g1v0246400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	TRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp\|Q3MBM5\|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr\|K7KJB6\|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400	Domains Coil G3DSA:1.20.120.430 G3DSA:3.30.1360.120 G3DSA:3.40.50.300 IPR004520 IPR005225 IPR006073 IPR018948 IPR025867 IPR027266 IPR027368 IPR027417 IPR031168 PF01926 PF10396 PF12631 PTHR42714 PTHR42714:SF1 SSF103025 SSF52540 TIGR00231 TIGR00450 cd04164	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd04164	CDD	1	33.33