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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0246400 |
| Transcript ID | LotjaGi1g1v0246400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA modification GTPase mnmE; TAIR: AT1G78010.1 tRNA modification GTPase; Swiss-Prot: sp|Q3MBM5|MNME_ANAVT tRNA modification GTPase MnmE; TrEMBL-Plants: tr|K7KJB6|K7KJB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59184176..59188339) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCTCTGCGTGTTGTGTTTCGTCACATACACATAAACATGAACCACTGCTACTCCACTTCACCACGACCCATGGG TGGTTTACTCCTCCACCGTCGCGACACGTGGCGGCGGCGCTGCAACAGTGTTAAACCCCGTGCATGTTCAGACAATCATC ACCGCAGTTACAGAGTAGTGCTGAACAAAGATGAACGGTTAGGAGAGCGTGTTGGTCACAACAACACTACCGAGCTCGGA AACTCGACGACGACCATTGCGGCCATCGTAACATCCTTGGGGGGCCCACCCGCCGCCGTCGGAATAGTTCGCCTCTCGGG TCCTCACGCGGTGTCCATAGCGGGTCGAGTGTTCAGACCCGGCCGGAGCACGTGGCGGCCCACCAGCCATGTGGTGGAGT ACGGCGTGGTCTTCGACTCCGACGGGAACGTCATCGACGAGGTTAGTACCCGAAACGACGGCGTCGTTTCACTGTTTGTG ATAATGTTGTGGTGGAAATTTCAAAATTGGGGTTTTCTCTTGTTGTTGTTGATAGGTTTTGGCGGTGCCGATGCTAGCAC CGAGGTCGTACACTCGGGAGGACGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTCCGTCGCGTGCTCAGAACT TGTTTGGAAGCTGGAGCAACACTAGCTCAACCAGGTCTGTGCTGTGTCTAAACCTAATTTTTTTGCTCCCTCGAGACGAA GTTTTGATTAAGCTTATAATAACAACTTATTGTTCGATTTTTTTTGTTTTTGGTTCATTAAATCTTGTCAAATAAGCTTG TTGGATAATGGCGAGTTGTTAGAAGTCCCACATTGGCTAGAGATATGATATAGATAATCTTTATAAAGGGTCGAGCAACC CTCAACTCTAGAGCTAGCTTATGAGTTGAGTTAGGCGTTTGGAATTCTAATACAAGTGTTTCATTGAAAGCTTTTATCTT AGTAGATTACGCATTAAATGTTCACAACAAATGTAGTATTTGTACGAATTGATGGATATTTATGTAGAATGAAGTGCATT CGGTTGGTGATTCTTGTATTCTCATTTCAGGTGAGTTTACTCTGCGTGCTTTTCTTAATGGGCGGTTGGATCTATCCCAA GCTGAAAATGTTGCGAAACTTATCGCAGCCAAATCCGTGGCTGCTGCAGATGCTGCGCTGGCGGGAATCCAGGCATGTCT AGCTCGACTCTGTTTTTCGTTCTGTGTTGCAGCATCATGTGCTTGTGCTTAGTTCATTGGTTGCATATGTGGGGGGTTAA ATGTTTTGTTACTTTTGAGTTTTGACAGCTGGATAAGTGATACTGAAAAACCGTTATCTTTTGGGACAGGGTGGTTTCTC TTCTCTTGTCAGATCGTTGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGACGATGAGA TGCCGCCTCTAAATTTGAATCAGATTATGGAAAAAATACATAATATGTCCCGAGATGTTGAGAATGCATTGGAAACAGCA AATTATGACAAGCTTCTGCAATCTGGATTACAGGTATGATCTGGAAGATGGCTTTCAACTTTGTAACAAGTGCTTATTTT TATGAAGTGTCATTGCACTCCAATAGGTATAAAACTTAGCTGTTGTTATACGTGGGTCTATTTTTACGTGAATTTCGTGA TTTCAATTGTTGGCTTTCCTAGTATTAATCTTATTGTAAAACTTTTGCAGATAGCAATTGTTGGCCGTCCAAATGTGGGC AAGTCAAGCCTTCTTAATGCTTGGAGCAAAGTATGTCAAAATATGTTACTTATTTAATAATTTCGAATGATATTTATTTA ATTATTGAATGTTGTTTTGATATTAGCCATGGTATTAGCAAGTGAAACCATTTAATCTTCAATTATTTTGTACTTAATTG ACTTCTGAAGTCCTTAATTAAAGGAGTGGAATTGGAGGTGTGTTTTGGGACAGGGGAGTTCATAGTTTAGTATCATCTCA GCATGTTTAACTTTTTGATTGTTTAACTTATTGAGCACGGTCTTGTAGCATGCAGAGTGAGAGGGCAATAGTCACCGAAA TTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATTAGCGTTAATGGGATTCCTATAACCCTTCTTGATACTGCAGGC ATCAGGGACACTGATGACATTGTTGAAAAGATTGGTGAGGCTTTCTTTTTCCTTCTTTAAGATCAAGATGAGGATAATTT TTTTATTGCACGATCTTTCACTTATCTGTACTGTGTGCTATGGCTGTTCAGTGTTTTGTGTGATCTTACAATGTCTGCCA TTGGAATAAAATAAATTCTTCATGATTTAGTCTTTCTATAATGTCTTCAACTTGTTTGAATGCTCGTTTATTAAAGTTAA TGAATTAGCACCAACCGCAGAATAATTTTTTATAAACTTCTTAATAATTCTCACTTCTTTGTAAGGGAACACCCAGAAAA TCAAGTAAAAGTCTGTTAGATACTGGGTTAGAGATTTTGTTTGATTTTACCCGGCAATATTTTAGATGCATTGTGTTGCA TGGATGTCAATTTTTTTGCTACACTAACCATATTGCTCCACATGTACTGAGATTTATATTTCTACTCTCTTAATAGGTGT AGAACGATCTGAAGCAGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACAGCTGAAG ACACCAAACTTCTTGAAAGGATTCAGTCTACTAAGGTTTTACCACACGATCCCCTTTCTCCCTATTCTCCTTCTCTTATT AATGAGATTTCATATTATTTTGATATAGATAGAAATATATATCCTTTTTATTTGATGGAGAAAGATTTGACATTTGAGAG GAATTTTTAGATATTGCTATTGAGTAGGCAGAATAGAACTGGCTAGGTGACCCCAGTTATATCTTTCACTATTTCAGTAT TTCTTAATATATATTATCTGATGATAAATTGGCACGCAAACACCTGGCTGCCTTGTAAACTTTGCCATCCTATTGTTACT TCAACAAGAACAGAATTCTTTTCTTGCTAGGTGGGGTTAGCTACATGGATCAAACAAAGCCAAATCCTCAAATATTCCAT TTAGATCCTACAGTTACCCCCGTGAAAAAAGACATCATCAAGGAAAAGGCCCTAAAACATTATAAATATGATATTGCTCT GGATATCTTTCTTTTGATATGAACCTAGTACCTGGTATTATTTGCAATCTTTATATAATCTTTCTATAACAGGAATCAAC TGGATCTTCCACCCCCGCAATCCTTGTTGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGGT GTCATGGTCACAATTTTTTCAGTAAAAGTGTGTTTACATGTGCTGTAACTGGTCAAGGATTACAAGACTTAGAGAGCACA GTTTTAGAGATGGTGGGTCTGGATGTAGTTCCTGCTGGAGGTCGCCGATGGACTGTCAATCAGGTAATCTTTTATGTTGG CTTTCTATCTTTCTCATGAAGTTTTAGCTCCAATGGGAAGGAATCAATAAGCTGCTTGAACTATGTATCGAAAGTAAAAT TAAACTAGAGGTGAAAGTCAAGATTTATGCATTGTAAAAGTGAAAATGGGTGATGGAAAATAACAATATAGTGGGATGCT AAGTACGACTCCATTTGCACTTAAATCAAAAGTTATGATCTTTTACTGCATGTGGTTTTTTTAGGCACAATTTGTTTTAA CTTTCAGCTTATGAGTGTTTTTTTCAATCTAGATAGTGTTTGTTCCTATCTAGATAGGTGCTTGTGGAAAAGTTTGCTGA GGAAGTATTTTAAAAGTGTATCTTAACTTGTATAAAAAATTGGTTCCTAACATTTTTTTCCCTTTTCTTATAAATGCTAG TTTAGAAGATTATCCAAACTGACTCTTAGTTAATATAACAATGATTCAGAGACAATGTGAACAACTTGTTCGGACCAAGG AAGCACTTTCAAGGTTACAATCATCAATAAGGGAGGAACTACCTCTGGATTTTTGGACAATTGATTTGAAGGATGCTGCA ATGTCCCTTGGACAGATAAATGGAGAAGATATATCAGAAGAGGTGTTATCAAATATATTTGGCAAGTTCTGTATTGGTAA ATAA
CDS sequence (LotjaGi1g1v0246400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCTGCGTGTTGTGTTTCGTCACATACACATAAACATGAACCACTGCTACTCCACTTCACCACGACCCATGGG TGGTTTACTCCTCCACCGTCGCGACACGTGGCGGCGGCGCTGCAACAGTGTTAAACCCCGTGCATGTTCAGACAATCATC ACCGCAGTTACAGAGTAGTGCTGAACAAAGATGAACGGTTAGGAGAGCGTGTTGGTCACAACAACACTACCGAGCTCGGA AACTCGACGACGACCATTGCGGCCATCGTAACATCCTTGGGGGGCCCACCCGCCGCCGTCGGAATAGTTCGCCTCTCGGG TCCTCACGCGGTGTCCATAGCGGGTCGAGTGTTCAGACCCGGCCGGAGCACGTGGCGGCCCACCAGCCATGTGGTGGAGT ACGGCGTGGTCTTCGACTCCGACGGGAACGTCATCGACGAGGTTTTGGCGGTGCCGATGCTAGCACCGAGGTCGTACACT CGGGAGGACGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTCCGTCGCGTGCTCAGAACTTGTTTGGAAGCTGG AGCAACACTAGCTCAACCAGGTGAGTTTACTCTGCGTGCTTTTCTTAATGGGCGGTTGGATCTATCCCAAGCTGAAAATG TTGCGAAACTTATCGCAGCCAAATCCGTGGCTGCTGCAGATGCTGCGCTGGCGGGAATCCAGGGTGGTTTCTCTTCTCTT GTCAGATCGTTGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGACGATGAGATGCCGCC TCTAAATTTGAATCAGATTATGGAAAAAATACATAATATGTCCCGAGATGTTGAGAATGCATTGGAAACAGCAAATTATG ACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAATGCTTGG AGCAAAAGTGAGAGGGCAATAGTCACCGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATTAGCGTTAATGG GATTCCTATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTTGAAAAGATTGGGAACACCCAGAAAA TCAAGTAA
Protein sequence (LotjaGi1g1v0246400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLRVVFRHIHINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRVVLNKDERLGERVGHNNTTELG NSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYT REDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVAKLIAAKSVAAADAALAGIQGGFSSL VRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAW SKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGNTQKIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 369 | 333 | 8.3E-186 | – | |
| PANTHER | 37 | 369 | 333 | 8.3E-186 | – | |
| Gene3D | 71 | 205 | 135 | 1.7E-42 | ||
| SUPERFAMILY | 84 | 205 | 122 | 4.08E-34 | – | |
| Pfam | 85 | 205 | 121 | 7.3E-36 | ||
| TIGRFAM | 98 | 370 | 273 | 1.2E-92 | ||
| SUPERFAMILY | 158 | 369 | 212 | 1.68E-29 | ||
| Gene3D | 206 | 300 | 95 | 7.8E-60 | ||
| Pfam | 208 | 301 | 94 | 2.7E-21 | ||
| Coils | 270 | 290 | 21 | - | – | |
| CDD | 298 | 369 | 72 | 2.77203E-45 | ||
| TIGRFAM | 301 | 368 | 68 | 4.7E-16 | ||
| Gene3D | 301 | 372 | 72 | 7.8E-60 | – | |
| Pfam | 302 | 361 | 60 | 6.5E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | TRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. |
Expression pattern of LotjaGi1g1v0246400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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